Thhalv10002956m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10002956m.g T259102_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10002956m MADS box 10 54

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.000
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.000
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.000
Bo5g145010 Brassica oleracea Bo5g145010 N 0.000
Bo9g078450 Brassica oleracea Bo9g078450 I 0.711
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.000
Bra029469 Brassica rapa Bra029469 I 0.711
Bra039404 Brassica rapa Bra039404 N 0.000
Carubv10001920m.g Capsella rubella Carubv10001920m.g N 0.000
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.000
Cla009163 Citrullus lanatus Cla009163 I 0.000
Cucsa.224270 Cucumis sativus Cucsa.224270 I 0.000
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.000
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.000
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.000
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.727
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.000
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.000
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.000
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.000
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.000
evm.TU.contig_35868 Carica papaya evm.TU.contig_35868 N 0.000
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.000
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.000
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.000
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.000
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.000
evm.TU.supercontig_100.9 Carica papaya evm.TU.supercontig_100.9 N 0.000
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.000
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.000
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.000
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.000
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.000
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.000
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.000
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.000
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.000
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.000
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.000
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.000
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.000
Gorai.004G229600 Gossypium raimondii Gorai.004G229600 N 0.000
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.000
Gorai.013G168300 Gossypium raimondii Gorai.013G168300 I 0.000
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.000
Gorai.013G210600 Gossypium raimondii Gorai.013G210600 N 0.000
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N 0.000
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.000
LjT04G17.30.nc Lotus japonicus LjT04G17.30.nc N 0.000
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.000
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.000
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.000
MDP0000152718 Malus domestica MDP0000152718 I 0.000
MDP0000159587 Malus domestica MDP0000159587 I 0.000
MDP0000236438 Malus domestica MDP0000236438 N 0.000
MDP0000451827 Malus domestica MDP0000451827 N 0.000
MDP0000925348 Malus domestica MDP0000925348 I 0.000
MTR_3g466980 Medicago truncatula MTR_3g466980 N 0.000
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.000
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.000
Pm007730 Prunus mume Pm007730 N 0.000
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.000
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.000
PRUPE_ppa022382mg Prunus persica PRUPE_ppa022382mg N 0.000
PRUPE_ppa022799mg Prunus persica PRUPE_ppa022799mg N 0.000
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.000
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.000
TCM_025671 Theobroma cacao TCM_025671 I 0.000
TCM_026842 Theobroma cacao TCM_026842 I 0.000
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.778
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.711
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.000