chr4.LjB15O07.110.nc (Lotus japonicus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 chr4.LjB15O07.110.nc T345123_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.834 0.379
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.LjB15O07.110.nc TCP 123 271

Links

Other TCP family TFs
Other Lotus japonicus TFs

97 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001041 Ricinus communis 29738.m001041 I 0.836
30174.m008721 Ricinus communis 30174.m008721 I 0.872
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.857
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.839
Bo1g117490 Brassica oleracea Bo1g117490 I 0.852
Bo2g055640 Brassica oleracea Bo2g055640 I 0.855
Bo3g071560 Brassica oleracea Bo3g071560 I 0.844
Bo5g117410 Brassica oleracea Bo5g117410 N 0.839
Bo6g099040 Brassica oleracea Bo6g099040 I 0.841
Bostr.19424s0807 Boechera stricta Bostr.19424s0807 I 0.871
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.833
Bra001710 Brassica rapa Bra001710 I 0.851
Bra004212 Brassica rapa Bra004212 I 0.866
Bra034010 Brassica rapa Bra034010 I 0.849
Bra037579 Brassica rapa Bra037579 I 0.852
BRC1 Arabidopsis lyrata scaffold_302193.1 N 0.845
BRC1 Arabidopsis thaliana AT3G18550 I 0.860
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.830
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.833
Cagra.1681s0023 Capsella grandiflora Cagra.1681s0023 I 0.836
Carubv10013748m.g Capsella rubella Carubv10013748m.g I 0.836
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.833
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.825
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.842
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.837
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.873
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.857
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.867
Cla016709 Citrullus lanatus Cla016709 I 0.851
Cla018797 Citrullus lanatus Cla018797 N 0.896
Cla019282 Citrullus lanatus Cla019282 N 0.883
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.832
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.869
Cucsa.198860 Cucumis sativus Cucsa.198860 N 0.895
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.834
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.883
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.843
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.849
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.897
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.866
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.825
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.925
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.967
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.938
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.947
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.906
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.884
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.828
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.841
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.855
LjSGA_018294.2 Lotus japonicus LjSGA_018294.2 I 0.889
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.846
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.826
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.836
MDP0000219838 Malus domestica MDP0000219838 N 0.878
MDP0000224810 Malus domestica MDP0000224810 N 0.885
mgf022233m Mimulus guttatus mgf022233m I 0.843
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.836
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.950
OBART09G10040 Oryza barthii OBART09G10040 I 0.843
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.843
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.831
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.839
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.858
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.867
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.839
OS09G0410500 Oryza sativa OS09G0410500 I 0.843
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.837
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.835
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.826
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.854
PK12240.1 Cannabis sativa PK12240.1 D 0.834
Pm015499 Prunus mume Pm015499 I 0.832
Pm030202 Prunus mume Pm030202 I 0.881
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.824
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.869
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.868
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.826
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.881
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.832
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.863
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.823
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.870
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.839
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.863
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.863
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.846
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.822
Si015230m.g Setaria italica Si015230m.g I 0.822
Si033183m.g Setaria italica Si033183m.g I 0.839
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.826
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.855
TCM_012252 Theobroma cacao TCM_012252 I 0.885
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.878
Thhalv10021948m.g Eutrema salsugineum Thhalv10021948m.g N 0.859
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.832
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.825