PK25720.1 (Cannabis sativa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PK25720.1 T144918_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.806 0.932
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.806 0.932
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK25720.1 C2H2 ZF 197 218
PK25720.1 C2H2 ZF 217 244

Links

Other C2H2 ZF family TFs
Other Cannabis sativa TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.000
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.000
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.000
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.000
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.000
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.000
DREB1C Arabidopsis thaliana AT4G25470 D 0.000
DREB1D Arabidopsis thaliana AT5G51990 D 0.000
DREB1A Arabidopsis thaliana AT4G25480 D 0.000
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.000
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.000
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.000
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.000
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.000
Bo9g104770 Brassica oleracea Bo9g104770 I 0.000
Bra028290 Brassica rapa Bra028290 I 0.000
PK23332.1 Cannabis sativa PK23332.1 I 0.000
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.000
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.000
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.000
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.000
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.000
Cla002362 Citrullus lanatus Cla002362 I 0.000
Cla006315 Citrullus lanatus Cla006315 I 0.000
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.000
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.000
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.000
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.000
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.000
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.000
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.000
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.000
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.000
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.000
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.000
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.000
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.000
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.000
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.000
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.000
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.000
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.000
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.000
mgf026642m Mimulus guttatus mgf026642m I 0.000
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.000
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.000
OBART02G27760 Oryza barthii OBART02G27760 I 0.000
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.000
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.000
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.000
DREB1G Oryza indica BGIOSGA008804 I 0.000
DREB1E Oryza indica BGIOSGA016950 I 0.000
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.000
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.000
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.000
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.000
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.000
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.000
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.000
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.000
DREB1E Oryza sativa OS04G0572400 D 0.000
DREB1G Oryza sativa OS02G0677300 D 0.000
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.000
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.000
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.000
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.000
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.000
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.000
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.000
30147.m014313 Ricinus communis 30147.m014313 I 0.000
30190.m011120 Ricinus communis 30190.m011120 I 0.000
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.000
Si011005m.g Setaria italica Si011005m.g I 0.000
Si018262m.g Setaria italica Si018262m.g I 0.000
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.000
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.000
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.000
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.000
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.000
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.000
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.000
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.000
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.000
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.000