Pavir.Ga00673 (Panicum virgatum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Pavir.Ga00673 T250815_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK15172.1
M01263_2.00 		Cannabis sativa
NNNGTWAHWN
NWDTWACNNN		 PBM
Lambert et al.(2019)
pTH10125 		0.945 0.765
OS02G0104500
M02271_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH8719 		0.885 0.647
OS02G0104500
M02272_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH9273 		0.885 0.647
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga00673.1.p MADF 287 357
Pavir.Ga00673.2.p MADF 287 357

Links

Other MADF family TFs
Other Panicum virgatum TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA04G0173400 Oryza glaberrima ORGLA04G0173400 I 0.968
Traes_1DL_772D1D7DF Triticum aestivum Traes_1DL_772D1D7DF I 0.967
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.967
MDP0000122269 Malus domestica MDP0000122269 I 0.965
evm.TU.supercontig_21.195 Carica papaya evm.TU.supercontig_21.195 I 0.961
PK14727.1 Cannabis sativa PK14727.1 I 0.961
MLOC_14207 Hordeum vulgare MLOC_14207 I 0.960
Traes_1AL_ED83D13D4 Triticum aestivum Traes_1AL_ED83D13D4 I 0.960
Eucgr.D02541 Eucalyptus grandis Eucgr.D02541 I 0.956
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.954
TRIUR3_29570 Triticum urartu TRIUR3_29570 I 0.954
BGIOSGA011584 Oryza indica BGIOSGA011584 I 0.952
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.951
Bo6g083670 Brassica oleracea Bo6g083670 I 0.947
PK15172.1 Cannabis sativa PK15172.1 D 0.945
Lus10028584.g Linum usitatissimum Lus10028584.g I 0.944
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.941
Traes_4DL_DC6A55EEE Triticum aestivum Traes_4DL_DC6A55EEE I 0.941
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.937
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.937
LjSGA_034643.2 Lotus japonicus LjSGA_034643.2 I 0.936
Pavir.J25029 Panicum virgatum Pavir.J25029 I 0.930
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.927
Pavir.Ib03751 Panicum virgatum Pavir.Ib03751 I 0.926
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.924
Aquca_023_00132 Aquilegia coerulea Aquca_023_00132 I 0.917
cassava25125.valid.m1 Manihot esculenta cassava25125.valid.m1 I 0.906
OB02G10400 Oryza brachyantha OB02G10400 I 0.904
POPTR_0310s00200 Populus trichocarpa POPTR_0310s00200 I 0.903
POPTR_0018s05520 Populus trichocarpa POPTR_0018s05520 I 0.903
SapurV1A.0435s0090 Salix purpurea SapurV1A.0435s0090 I 0.903
POPTR_0018s05540 Populus trichocarpa POPTR_0018s05540 I 0.902
Ciclev10010595m.g Citrus clementina Ciclev10010595m.g I 0.897
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.897
GRMZM2G037128 Zea mays GRMZM2G037128 I 0.897
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.897
Pavir.Aa03569 Panicum virgatum Pavir.Aa03569 I 0.897
Pavir.Ab00054 Panicum virgatum Pavir.Ab00054 I 0.897
Sb04g000520 Sorghum bicolor Sb04g000520 I 0.897
POPTR_0006s23800 Populus trichocarpa POPTR_0006s23800 I 0.896
SapurV1A.0710s0040 Salix purpurea SapurV1A.0710s0040 I 0.896
29739.m003611 Ricinus communis 29739.m003611 I 0.895
LPERR02G00380 Leersia perrieri LPERR02G00380 I 0.893
Si033157m.g Setaria italica Si033157m.g I 0.889
OGLUM02G00360 Oryza glumaepatula OGLUM02G00360 I 0.885
GRMZM2G111760 Zea mays GRMZM2G111760 I 0.885
OMERI02G09240 Oryza meridionalis OMERI02G09240 I 0.885
OBART02G00380 Oryza barthii OBART02G00380 I 0.885
ONIVA02G00390 Oryza nivara ONIVA02G00390 I 0.885
ORUFI02G00410 Oryza rufipogon ORUFI02G00410 I 0.885
BGIOSGA007300 Oryza indica BGIOSGA007300 I 0.885
ORGLA02G0003500 Oryza glaberrima ORGLA02G0003500 I 0.885
OS02G0104500 Oryza sativa OS02G0104500 D 0.885
OPUNC02G00050 Oryza punctata OPUNC02G00050 I 0.885
gene15385-v1.0-hybrid Fragaria vesca gene15385-v1.0-hybrid I 0.877
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.875
SELMODRAFT_24518 Selaginella moellendorffii SELMODRAFT_24518 I 0.868
SELMODRAFT_14382 Selaginella moellendorffii SELMODRAFT_14382 I 0.868
Traes_6AS_52AE4A6E2 Triticum aestivum Traes_6AS_52AE4A6E2 I 0.859
TRIUR3_30093 Triticum urartu TRIUR3_30093 I 0.859
GLYMA09G01670 Glycine max GLYMA09G01670 N 0.858
BRADI3G00697 Brachypodium distachyon BRADI3G00697 I 0.858
evm.TU.supercontig_126.31 Carica papaya evm.TU.supercontig_126.31 I 0.853
GLYMA15G12591 Glycine max GLYMA15G12591 N 0.848
GSMUA_Achr1G24120_001 Musa acuminata GSMUA_Achr1G24120_001 I 0.847
Gorai.010G096900 Gossypium raimondii Gorai.010G096900 I 0.847
MLOC_25460 Hordeum vulgare MLOC_25460 I 0.846
LjSGA_134698.1 Lotus japonicus LjSGA_134698.1 I 0.841
PK17889.1 Cannabis sativa PK17889.1 N 0.836
Ca_07908 Cicer arietinum Ca_07908 N 0.836
TCM_037381 Theobroma cacao TCM_037381 I 0.834
Aquca_005_00325 Aquilegia coerulea Aquca_005_00325 N 0.822
MTR_2g026725 Medicago truncatula MTR_2g026725 I 0.822
Pm009623 Prunus mume Pm009623 N 0.816
PRUPE_ppa026454mg Prunus persica PRUPE_ppa026454mg N 0.816