Cagra.1504s0017 (Capsella grandiflora)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cagra.1504s0017 T142645_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.766 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1504s0017.1.p C2H2 ZF 27 49

Links

Other C2H2 ZF family TFs
Other Capsella grandiflora TFs

97 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30174.m008721 Ricinus communis 30174.m008721 I
AC233950.1_FG002 Zea mays AC233950.1_FG002 I
AC234521.1_FG006 Zea mays AC234521.1_FG006 N
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I
BRC1 Arabidopsis thaliana AT3G18550 I
BGIOSGA013417 Oryza indica BGIOSGA013417 I
BGIOSGA028717 Oryza indica BGIOSGA028717 I
BGIOSGA030744 Oryza indica BGIOSGA030744 I
Bo1g117490 Brassica oleracea Bo1g117490 I
Bo3g071560 Brassica oleracea Bo3g071560 I
Bo5g117410 Brassica oleracea Bo5g117410 N
Bostr.19424s0807 Boechera stricta Bostr.19424s0807 I
Bra001710 Brassica rapa Bra001710 I
Bra037579 Brassica rapa Bra037579 I
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I
Cagra.1681s0023 Capsella grandiflora Cagra.1681s0023 I
Carubv10013748m.g Capsella rubella Carubv10013748m.g I
cassava32886.m1 Manihot esculenta cassava32886.m1 I
cassava9378.m1 Manihot esculenta cassava9378.m1 I
Cla016709 Citrullus lanatus Cla016709 I
Cla018797 Citrullus lanatus Cla018797 N
Cla019282 Citrullus lanatus Cla019282 N
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I
F775_01923 Aegilops tauschii F775_01923 I
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I
GRMZM2G031905 Zea mays GRMZM2G031905 I
GRMZM2G060319 Zea mays GRMZM2G060319 I
GRMZM2G062711 Zea mays GRMZM2G062711 I
GRMZM2G064628 Zea mays GRMZM2G064628 I
GRMZM2G110242 Zea mays GRMZM2G110242 I
GRMZM2G166687 Zea mays GRMZM2G166687 I
GRMZM2G414114 Zea mays GRMZM2G414114 N
GRMZM2G458087 Zea mays GRMZM2G458087 N
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I
LPERR03G25950 Leersia perrieri LPERR03G25950 I
LPERR08G12880 Leersia perrieri LPERR08G12880 I
LPERR09G06870 Leersia perrieri LPERR09G06870 I
MDP0000224810 Malus domestica MDP0000224810 N
MLOC_4614 Hordeum vulgare MLOC_4614 I
MLOC_58142 Hordeum vulgare MLOC_58142 I
MLOC_70116 Hordeum vulgare MLOC_70116 I
OBART03G31290 Oryza barthii OBART03G31290 I
OBART08G15630 Oryza barthii OBART08G15630 N
OBART09G10040 Oryza barthii OBART09G10040 I
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I
OGLUM08G16380 Oryza glumaepatula OGLUM08G16380 I
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I
OMERI03G27910 Oryza meridionalis OMERI03G27910 I
OMERI08G12900 Oryza meridionalis OMERI08G12900 I
OMERI09G07770 Oryza meridionalis OMERI09G07770 I
ONIVA03G32600 Oryza nivara ONIVA03G32600 I
ONIVA08G16720 Oryza nivara ONIVA08G16720 I
ONIVA09G09540 Oryza nivara ONIVA09G09540 I
OPUNC03G28490 Oryza punctata OPUNC03G28490 I
OPUNC08G13710 Oryza punctata OPUNC08G13710 I
OPUNC09G08520 Oryza punctata OPUNC09G08520 I
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I
ORUFI08G17540 Oryza rufipogon ORUFI08G17540 I
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I
TB1 Oryza sativa OS03G0706500 D
OS08G0432300 Oryza sativa OS08G0432300 I
OS09G0410500 Oryza sativa OS09G0410500 I
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I
Pavir.Ia00838 Panicum virgatum Pavir.Ia00838 I
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I
Pm015499 Prunus mume Pm015499 I
Pm030202 Prunus mume Pm030202 I
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I
Sb01g010690 Sorghum bicolor Sb01g010690 I
Sb02g024450 Sorghum bicolor Sb02g024450 I
Sb07g021140 Sorghum bicolor Sb07g021140 I
BRC1 Arabidopsis lyrata scaffold_302193.1 N
Si015230m.g Setaria italica Si015230m.g I
Si033183m.g Setaria italica Si033183m.g I
Si038692m.g Setaria italica Si038692m.g I
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N
TCM_012252 Theobroma cacao TCM_012252 I
TCM_019518 Theobroma cacao TCM_019518 I
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I
Thhalv10021948m.g Eutrema salsugineum Thhalv10021948m.g N
Traes_2DS_4C8E5F416 Triticum aestivum Traes_2DS_4C8E5F416 N
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I
TRIUR3_20728 Triticum urartu TRIUR3_20728 I
TRIUR3_31795 Triticum urartu TRIUR3_31795 I