XP_002938936 (Xenopus tropicalis)
Grainyhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04516 (CP2) IPR007604 XP_002938936 T199617_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GRHL1
M03071_2.00 		Homo sapiens
RACYKGWHNDWCMGGTT
AACCKGWHNDWCMRGTY		 SELEX
Jolma et al.(2013)
GRHL1_1 		0.929 0.929
GRHL1
M03072_2.00 		Homo sapiens
DAACCGGTTH
DAACCGGTTH		 SELEX
Jolma et al.(2013)
GRHL1_2 		0.929 0.929
GRHL1
M03073_2.00 		Homo sapiens
HWAACCGGTTTD
HAAACCGGTTWD		 SELEX
Jolma et al.(2013)
GRHL1_3 		0.929 0.929
GRHL1
M04887_2.00 		Homo sapiens
DAACCGGTTH
DAACCGGTTH		 SELEX
Yin et al.(2017)
GRHL1_eDBD_HT-SELEX 		0.929 0.929
GRHL1
M04888_2.00 		Homo sapiens
DAACMKGTTH
DAACMKGTTH		 SELEX
Yin et al.(2017)
GRHL1_eDBD_Methyl-HT-SELEX 		0.929 0.929
Grhl2
M09126_2.00 		Mus musculus
RDCCDGTYYKDC
GHMRRACHGGHY		 Misc
Kulakovskiy et al.(2013)
GRHL2_MOUSE.H11MO.0.A 		0.726 0.726
GRHL2
M08129_2.00 		Homo sapiens
NNNAACTGGTTTNNN
NNNAAACCAGTTNNN		 ChIP-seq
Mathelier et al.(2014)
MA1105.1 		0.722 0.722
GRHL2
M09125_2.00 		Homo sapiens
AACYDGYYBDDC
GHHVRRCHRGTT		 Misc
Kulakovskiy et al.(2013)
GRHL2_HUMAN.H11MO.0.A 		0.722 0.722
GRHL2
M09558_2.00 		Homo sapiens
NRAACHDGHHDDDCHDGTTY
RAACHDGHHHDDCHDGTTYN		 Misc
Heinz et al.(2010)
HBE-GRHL2_GSE46194 		0.722 0.722
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002938936 Grainyhead 226 437

Links

Other Grainyhead family TFs
Other Xenopus tropicalis TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27810.m000639 Ricinus communis 27810.m000639 I 0.000
29680.m001737 Ricinus communis 29680.m001737 I 0.000
29729.m002292 Ricinus communis 29729.m002292 I 0.000
30170.m014115 Ricinus communis 30170.m014115 I 0.000
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.000
Aquca_004_00452 Aquilegia coerulea Aquca_004_00452 I 0.000
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.000
DREB2D Arabidopsis thaliana AT1G75490 D 0.000
DREB2G Arabidopsis thaliana AT5G18450 D 0.000
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.000
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.000
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.000
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.000
Bo2g016490 Brassica oleracea Bo2g016490 I 0.000
Bo2g083920 Brassica oleracea Bo2g083920 I 0.000
Bo3g013160 Brassica oleracea Bo3g013160 I 0.000
Bo6g073020 Brassica oleracea Bo6g073020 I 0.000
Bo6g086320 Brassica oleracea Bo6g086320 I 0.000
Bo6g119660 Brassica oleracea Bo6g119660 I 0.000
Bo9g155940 Brassica oleracea Bo9g155940 I 0.000
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.000
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.000
Bra002159 Brassica rapa Bra002159 I 0.000
Bra003752 Brassica rapa Bra003752 I 0.000
Bra006460 Brassica rapa Bra006460 I 0.000
Bra008200 Brassica rapa Bra008200 I 0.000
Bra015840 Brassica rapa Bra015840 I 0.000
Bra023674 Brassica rapa Bra023674 I 0.000
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.000
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.000
BRADI3G12680 Brachypodium distachyon BRADI3G12680 I 0.000
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.000
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.000
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.000
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.000
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.000
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.000
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.000
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.000
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.000
Ca_07264 Cicer arietinum Ca_07264 I 0.000
Ca_10770 Cicer arietinum Ca_10770 I 0.000
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.000
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.000
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.000
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.000
Cla006713 Citrullus lanatus Cla006713 I 0.000
Cla021113 Citrullus lanatus Cla021113 I 0.000
Cla022803 Citrullus lanatus Cla022803 I 0.000
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.000
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.000
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.000
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.000
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.000
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.000
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.000
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.000
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.000
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.000
F775_05774 Aegilops tauschii F775_05774 I 0.000
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.000
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.000
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.000
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.000
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.000
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.000
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.000
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.000
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.000
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.000
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.000
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.000
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.000
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.000
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.000
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.000
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.000
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.000
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.000
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.000
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.000
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.000
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.000
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.000
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.000
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.000
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.000
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.000
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.000
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.000
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.000
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.000
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.000
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.000
MDP0000141335 Malus domestica MDP0000141335 I 0.000
MDP0000147009 Malus domestica MDP0000147009 I 0.000
MDP0000165880 Malus domestica MDP0000165880 I 0.000
MDP0000250924 Malus domestica MDP0000250924 I 0.000
MDP0000250927 Malus domestica MDP0000250927 I 0.000
MDP0000295902 Malus domestica MDP0000295902 I 0.000
MDP0000446783 Malus domestica MDP0000446783 I 0.000
mgf017629m Mimulus guttatus mgf017629m I 0.000
mgf024545m Mimulus guttatus mgf024545m I 0.000
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.000
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.000
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.000
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.000
OB01G13930 Oryza brachyantha OB01G13930 I 0.000
OB08G30790 Oryza brachyantha OB08G30790 I 0.000
OBART01G04210 Oryza barthii OBART01G04210 I 0.000
OBART03G05550 Oryza barthii OBART03G05550 I 0.000
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.000
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.000
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.000
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.000
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.000
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.000
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.000
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.000
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.000
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.000
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.000
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.000
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.000
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.000
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.000
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.000
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.000
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.000
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.000
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.000
DREB2A Oryza sativa OS01G0165000 I 0.000
DREB2E Oryza sativa OS03G0174400 I 0.000
DREB2C Oryza sativa OS08G0565200 I 0.000
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.000
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.000
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.000
Pavir.J37967 Panicum virgatum Pavir.J37967 I 0.000
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.000
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.000
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.000
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.000
PK07402.1 Cannabis sativa PK07402.1 D 0.000
PK07829.1 Cannabis sativa PK07829.1 I 0.000
PK08602.1 Cannabis sativa PK08602.1 D 0.000
Pm003634 Prunus mume Pm003634 I 0.000
Pm006274 Prunus mume Pm006274 I 0.000
Pm018989 Prunus mume Pm018989 I 0.000
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.000
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.000
POPTR_0006s10510 Populus trichocarpa POPTR_0006s10510 I 0.000
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.000
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.000
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.000
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.000
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.000
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.000
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.000
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.000
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.000
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.000
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.000
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.000
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.000
Sb03g004980 Sorghum bicolor Sb03g004980 I 0.000
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.000
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.000
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.000
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.000
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.000
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.000
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.000
Si002067m.g Setaria italica Si002067m.g I 0.000
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.000
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.000
TCM_024756 Theobroma cacao TCM_024756 I 0.000
TCM_026121 Theobroma cacao TCM_026121 I 0.000
TCM_034132 Theobroma cacao TCM_034132 I 0.000
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.000
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.000
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.000
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.000
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.000
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.000
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.000
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.000
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.000