Carubv10002425m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10002425m.g T007816_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.800 0.980
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.719 0.816
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.719 0.816
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.719 0.816
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.699 0.796
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.688 0.776
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.686 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10002425m AP2 32 83

Links

Other AP2 family TFs
Other Capsella rubella TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2D Arabidopsis thaliana AT1G75490 D 0.719
DREB2G Arabidopsis thaliana AT5G18450 D 0.800
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.686
PK07402.1 Cannabis sativa PK07402.1 D 0.699
PK08602.1 Cannabis sativa PK08602.1 D 0.688
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.686
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.681
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.677
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.690
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.690
Bo2g016490 Brassica oleracea Bo2g016490 I 0.780
Bo2g083920 Brassica oleracea Bo2g083920 I 0.720
Bo3g013160 Brassica oleracea Bo3g013160 I 0.736
Bo6g073020 Brassica oleracea Bo6g073020 I 0.683
Bo6g086320 Brassica oleracea Bo6g086320 I 0.716
Bo6g119660 Brassica oleracea Bo6g119660 I 0.719
Bo9g155940 Brassica oleracea Bo9g155940 I 0.800
Bra002159 Brassica rapa Bra002159 I 0.800
Bra003752 Brassica rapa Bra003752 I 0.716
Bra006460 Brassica rapa Bra006460 I 0.736
Bra008200 Brassica rapa Bra008200 I 0.720
Bra015840 Brassica rapa Bra015840 I 0.719
Bra023674 Brassica rapa Bra023674 I 0.780
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.677
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.687
BRADI3G12680 Brachypodium distachyon BRADI3G12680 I 0.684
F775_05774 Aegilops tauschii F775_05774 I 0.686
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.719
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.677
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.678
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.715
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.715
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.677
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.717
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.717
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.678
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.687
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.687
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.677
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.677
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.684
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.713
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.697
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.727
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.696
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.688
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.683
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.686
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.715
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.693
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.678
OB01G13930 Oryza brachyantha OB01G13930 I 0.681
OB08G30790 Oryza brachyantha OB08G30790 I 0.690
OBART01G04210 Oryza barthii OBART01G04210 I 0.681
OBART03G05550 Oryza barthii OBART03G05550 I 0.677
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.681
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.677
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.690
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.681
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.681
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.677
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.690
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.681
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.677
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.690
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.681
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.677
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.690
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.681
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.690
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.681
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.677
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.690
DREB2A Oryza sativa OS01G0165000 I 0.681
DREB2E Oryza sativa OS03G0174400 I 0.677
DREB2C Oryza sativa OS08G0565200 I 0.690
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.678
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.707
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.760
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.717
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.718
POPTR_0006s10510 Populus trichocarpa POPTR_0006s10510 I 0.683
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.683
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.693
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.678
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.677
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.720
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.749
Sb03g004980 Sorghum bicolor Sb03g004980 I 0.697
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.694
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.699
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.800
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.700
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.687
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.687
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.700
Si002067m.g Setaria italica Si002067m.g I 0.694
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.760
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.707
TCM_024756 Theobroma cacao TCM_024756 I 0.678
TCM_026121 Theobroma cacao TCM_026121 I 0.712
TCM_034132 Theobroma cacao TCM_034132 I 0.717
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.686
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.686
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.686
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.678
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.700
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.720
Ca_07264 Cicer arietinum Ca_07264 I 0.678
Ca_10770 Cicer arietinum Ca_10770 I 0.715
Cla006713 Citrullus lanatus Cla006713 I 0.715
Cla021113 Citrullus lanatus Cla021113 I 0.717
Cla022803 Citrullus lanatus Cla022803 I 0.679
Pm003634 Prunus mume Pm003634 I 0.744
Pm006274 Prunus mume Pm006274 I 0.718
Pm018989 Prunus mume Pm018989 I 0.677
27810.m000639 Ricinus communis 27810.m000639 I 0.678
29680.m001737 Ricinus communis 29680.m001737 I 0.741
29729.m002292 Ricinus communis 29729.m002292 I 0.704
30170.m014115 Ricinus communis 30170.m014115 I 0.718
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.678
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.693
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.744
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.678
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.718
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.717
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.707
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.679
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.679
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.718
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.706
mgf017629m Mimulus guttatus mgf017629m I 0.736
mgf024545m Mimulus guttatus mgf024545m I 0.719
Aquca_004_00452 Aquilegia coerulea Aquca_004_00452 I 0.683
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.688
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.800
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.719
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.807
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.719
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.719
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.718
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.678
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.705
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.692
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.701
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.701
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.717
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.783
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.717
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.721
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.755
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.683
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.678
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.719
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.729
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.719
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.729
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.718
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.684
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.703
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.684
MDP0000141335 Malus domestica MDP0000141335 I 0.716
MDP0000147009 Malus domestica MDP0000147009 I 0.677
MDP0000165880 Malus domestica MDP0000165880 I 0.684
MDP0000250924 Malus domestica MDP0000250924 I 0.722
MDP0000250927 Malus domestica MDP0000250927 I 0.712
MDP0000295902 Malus domestica MDP0000295902 I 0.716
MDP0000446783 Malus domestica MDP0000446783 I 0.677
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.718
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.678
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.695
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.677
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.677
Pavir.J37967 Panicum virgatum Pavir.J37967 I 0.697
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.678
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.707
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.678
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.691
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.678
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.691
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.800
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.681
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.719
PK07829.1 Cannabis sativa PK07829.1 I 0.706
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.681
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.715
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.708