Solyc05g009900.1 (Solanum lycopersicum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Solyc05g009900.1 T344413_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.910 0.411
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.860 0.390
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.844 0.333
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc05g009900.1.1 TCP 135 275

Links

Other TCP family TFs
Other Solanum lycopersicum TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCP1 Arabidopsis thaliana AT1G67260 D 0.844
PK19717.1 Cannabis sativa PK19717.1 D 0.860
PK12240.1 Cannabis sativa PK12240.1 D 0.910
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.850
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.912
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.911
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.852
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.824
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.900
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.900
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.824
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.833
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.900
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.871
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.892
mgf026636m Mimulus guttatus mgf026636m I 0.898
mgf024687m Mimulus guttatus mgf024687m I 0.840
mgf022233m Mimulus guttatus mgf022233m I 0.823
mgf019480m Mimulus guttatus mgf019480m I 0.858
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.858
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.906
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.878
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.917
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.846
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.911
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.897
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.898
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.903
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.838
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.827
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.827
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.886
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.845
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.919
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.838
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.867
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.852
MDP0000272980 Malus domestica MDP0000272980 I 0.907
MDP0000173048 Malus domestica MDP0000173048 I 0.911
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.863
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.881
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.920
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.889
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.897
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.876
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.846
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.912
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.913
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.964
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.901
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.886
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.906
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.895
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.906
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.897
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.906
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.905
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.899
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.857
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.865
Bra038350 Brassica rapa Bra038350 I 0.905
Bra034010 Brassica rapa Bra034010 I 0.843
Bra004212 Brassica rapa Bra004212 I 0.849
Bra004097 Brassica rapa Bra004097 I 0.859
Bo6g103670 Brassica oleracea Bo6g103670 I 0.849
Bo6g099040 Brassica oleracea Bo6g099040 I 0.841
Bo2g061250 Brassica oleracea Bo2g061250 I 0.905
Bo2g055640 Brassica oleracea Bo2g055640 I 0.831
BRC2 Arabidopsis thaliana AT1G68800 I 0.916
TCM_011874 Theobroma cacao TCM_011874 I 0.924
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.876
30167.m000856 Ricinus communis 30167.m000856 I 0.890
29738.m001041 Ricinus communis 29738.m001041 I 0.909
Pm029002 Prunus mume Pm029002 I 0.907
Pm015499 Prunus mume Pm015499 I 0.838
Cla016709 Citrullus lanatus Cla016709 I 0.878
Cla007227 Citrullus lanatus Cla007227 I 0.896
Cla002355 Citrullus lanatus Cla002355 I 0.908
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.861
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.918
TCM_019518 Theobroma cacao TCM_019518 I 0.909
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.946
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.945
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.840
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.834
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.907
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.867
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.844
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.852
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.923
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.906
MDP0000224810 Malus domestica MDP0000224810 N 0.828