Gorai.009G271400 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.009G271400 T008659_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.769 0.898
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.769 0.898
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.769 0.898
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.737 0.816
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.705 0.796
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.680 0.755
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G271400.1 AP2 36 87

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_05774 Aegilops tauschii F775_05774 I 0.680
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.688
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.769
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.737
DREB2D Arabidopsis thaliana AT1G75490 D 0.769
DREB2G Arabidopsis thaliana AT5G18450 D 0.737
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.737
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.769
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.677
Bo2g016490 Brassica oleracea Bo2g016490 I 0.717
Bo2g083920 Brassica oleracea Bo2g083920 I 0.775
Bo3g013160 Brassica oleracea Bo3g013160 I 0.693
Bo6g086320 Brassica oleracea Bo6g086320 I 0.756
Bo6g119660 Brassica oleracea Bo6g119660 I 0.769
Bo9g155940 Brassica oleracea Bo9g155940 I 0.737
Bra002159 Brassica rapa Bra002159 I 0.737
Bra003752 Brassica rapa Bra003752 I 0.756
Bra006460 Brassica rapa Bra006460 I 0.693
Bra008200 Brassica rapa Bra008200 I 0.775
Bra015840 Brassica rapa Bra015840 I 0.769
Bra023674 Brassica rapa Bra023674 I 0.717
PK07402.1 Cannabis sativa PK07402.1 D 0.705
PK07829.1 Cannabis sativa PK07829.1 I 0.680
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.729
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.769
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.729
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.769
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.695
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.737
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.761
Ca_10770 Cicer arietinum Ca_10770 I 0.753
Cla006713 Citrullus lanatus Cla006713 I 0.707
Cla021113 Citrullus lanatus Cla021113 I 0.763
Cla022803 Citrullus lanatus Cla022803 I 0.725
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.765
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.707
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.679
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.679
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.765
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.708
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.725
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.766
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.679
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.713
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.680
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.720
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.737
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.684
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.769
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I 0.682
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.772
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.744
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.753
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.753
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.763
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.763
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.770
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.735
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.770
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.680
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.678
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.683
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.695
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.728
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.715
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.721
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.728
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.720
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.753
MDP0000141335 Malus domestica MDP0000141335 I 0.758
MDP0000153866 Malus domestica MDP0000153866 I 0.678
MDP0000223609 Malus domestica MDP0000223609 I 0.693
MDP0000250924 Malus domestica MDP0000250924 I 0.770
MDP0000250927 Malus domestica MDP0000250927 I 0.746
MDP0000295902 Malus domestica MDP0000295902 I 0.758
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.693
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.713
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.765
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.760
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.753
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.731
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.683
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.687
mgf017629m Mimulus guttatus mgf017629m I 0.735
mgf024545m Mimulus guttatus mgf024545m I 0.766
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.695
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.719
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.704
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.733
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.701
OBART01G04210 Oryza barthii OBART01G04210 I 0.679
OB01G13930 Oryza brachyantha OB01G13930 I 0.679
OB08G30790 Oryza brachyantha OB08G30790 I 0.687
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.679
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.687
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.679
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.687
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.679
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.687
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.687
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.679
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.679
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.687
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.679
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.687
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.679
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.687
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.679
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.687
DREB2A Oryza sativa OS01G0165000 I 0.679
DREB2C Oryza sativa OS08G0565200 I 0.687
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.698
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.678
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.701
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.763
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.757
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.698
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.691
Pm003634 Prunus mume Pm003634 I 0.725
Pm006274 Prunus mume Pm006274 I 0.766
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.762
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.731
29680.m001737 Ricinus communis 29680.m001737 I 0.710
29729.m002292 Ricinus communis 29729.m002292 I 0.685
30170.m014115 Ricinus communis 30170.m014115 I 0.765
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.750
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.691
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.687
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.691
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.687
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.699
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.699
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.736
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.691
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.717
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.691
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.717
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.736
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.698
TCM_026121 Theobroma cacao TCM_026121 I 0.712
TCM_034132 Theobroma cacao TCM_034132 I 0.756
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.680
Traes_2BL_B397F2CE3 Triticum aestivum Traes_2BL_B397F2CE3 I 0.678
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.680
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.680
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.680
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.706
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.764
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.693
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.693