Bo2g055640 (Brassica oleracea)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bo2g055640 T343726_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.898 0.492
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.862 0.407
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.837 0.407
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g055640.1 TCP 84 235

Links

Other TCP family TFs
Other Brassica oleracea TFs

98 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.844
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.891
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.834
BRC2 Arabidopsis thaliana AT1G68800 I 0.826
TCP1 Arabidopsis thaliana AT1G67260 D 0.898
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.836
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.907
Bo2g061250 Brassica oleracea Bo2g061250 I 0.822
Bo6g099040 Brassica oleracea Bo6g099040 I 0.934
Bo6g103670 Brassica oleracea Bo6g103670 I 0.918
Bra004097 Brassica rapa Bra004097 I 0.931
Bra004212 Brassica rapa Bra004212 I 0.930
Bra034010 Brassica rapa Bra034010 I 0.956
Bra038350 Brassica rapa Bra038350 I 0.822
PK12240.1 Cannabis sativa PK12240.1 D 0.862
PK19717.1 Cannabis sativa PK19717.1 D 0.837
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.914
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.836
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.836
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.912
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.843
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.894
Cla016709 Citrullus lanatus Cla016709 I 0.883
Cla007227 Citrullus lanatus Cla007227 I 0.871
Cla002355 Citrullus lanatus Cla002355 I 0.835
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.828
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.828
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.863
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.894
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.847
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.869
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.840
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.944
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.857
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.878
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.872
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.850
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.851
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.849
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.872
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.886
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.857
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.881
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.822
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.827
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.824
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.826
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.824
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.855
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.864
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.869
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.835
MDP0000173048 Malus domestica MDP0000173048 I 0.836
MDP0000272980 Malus domestica MDP0000272980 I 0.828
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.862
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.845
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.837
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.842
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.865
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.885
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.842
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.837
mgf026636m Mimulus guttatus mgf026636m I 0.846
mgf019480m Mimulus guttatus mgf019480m I 0.881
mgf022233m Mimulus guttatus mgf022233m I 0.873
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.826
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.824
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.828
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.878
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.839
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.836
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.838
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.823
Pm015499 Prunus mume Pm015499 I 0.894
Pm030202 Prunus mume Pm030202 I 0.824
Pm029002 Prunus mume Pm029002 I 0.838
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.894
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.838
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.824
30174.m008721 Ricinus communis 30174.m008721 I 0.842
30167.m000856 Ricinus communis 30167.m000856 I 0.854
29738.m001041 Ricinus communis 29738.m001041 I 0.849
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.824
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.841
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.836
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.878
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.822
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.822
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.839
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.831
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.849
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.842
TCM_019518 Theobroma cacao TCM_019518 I 0.888
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.833
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.822
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.846
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.827
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.826