Cagra.0568s0175 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.0568s0175 T007704_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G63040
M06590_2.00 		Arabidopsis thaliana
TTGAAA
TTTCAA		 Dap-seq
OMalley et al.(2016)
AT1G63040_col_a 		0.747 0.898
ERF027
M06566_2.00 		Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN
NTGTCGGYRRNDNNDNNNNNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_col_a 		0.742 0.959
ERF027
M06567_2.00 		Arabidopsis thaliana
NNYYRCCGACANHNNN
NNNDNTGTCGGYRRNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a 		0.742 0.959
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0568s0175.1.p AP2 13 63

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10009659m.g Eutrema salsugineum Thhalv10009659m.g I 0.764
Carubv10012147m.g Capsella rubella Carubv10012147m.g I 0.764
PGSC0003DMG400022759 Solanum tuberosum PGSC0003DMG400022759 I 0.756
Bostr.13671s0198 Boechera stricta Bostr.13671s0198 I 0.756
Solyc08g080290.2 Solanum lycopersicum Solyc08g080290.2 I 0.756
Aquca_013_00433 Aquilegia coerulea Aquca_013_00433 I 0.755
AT1G63040 Arabidopsis thaliana AT1G63040 D 0.747
ERF027 Arabidopsis thaliana AT1G12630 D 0.742
fgenesh1_pm.C_scaffold_1001063 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001063 I 0.742
scaffold_101390.1 Arabidopsis lyrata scaffold_101390.1 I 0.742
Cucsa.302760 Cucumis sativus Cucsa.302760 I 0.739
TCM_016176 Theobroma cacao TCM_016176 I 0.738
Carubv10022214m.g Capsella rubella Carubv10022214m.g I 0.738
Cagra.6357s0007 Capsella grandiflora Cagra.6357s0007 I 0.738
Cla011673 Citrullus lanatus Cla011673 I 0.733
Bo9g036590 Brassica oleracea Bo9g036590 I 0.725
MDP0000189347 Malus domestica MDP0000189347 I 0.722
Al_scaffold_0240_1 Arabidopsis lyrata Al_scaffold_0240_1 I 0.721
Bra027615 Brassica rapa Bra027615 I 0.721
Al_scaffold_0002_210 Arabidopsis lyrata Al_scaffold_0002_210 I 0.721
Bra027616 Brassica rapa Bra027616 I 0.721
30147.m014311 Ricinus communis 30147.m014311 I 0.718
Cla004491 Citrullus lanatus Cla004491 I 0.713
Gorai.003G162600 Gossypium raimondii Gorai.003G162600 I 0.709
Bo9g028820 Brassica oleracea Bo9g028820 I 0.705
Bra016761 Brassica rapa Bra016761 I 0.705
Bo8g064940 Brassica oleracea Bo8g064940 I 0.705
Thhalv10023678m.g Eutrema salsugineum Thhalv10023678m.g I 0.699
PGSC0003DMG400012527 Solanum tuberosum PGSC0003DMG400012527 I 0.693
MDP0000262710 Malus domestica MDP0000262710 I 0.686
GLYMA10G38420 Glycine max GLYMA10G38420 I 0.686
VIT_16s0100g00400 Vitis vinifera VIT_16s0100g00400 I 0.680
LPERR02G22600 Leersia perrieri LPERR02G22600 I 0.678
GRMZM2G000520 Zea mays GRMZM2G000520 I 0.678
Pavir.Ab02683 Panicum virgatum Pavir.Ab02683 I 0.678
BGIOSGA008802 Oryza indica BGIOSGA008802 I 0.678
OBART02G27750 Oryza barthii OBART02G27750 I 0.678
OMERI02G26970 Oryza meridionalis OMERI02G26970 I 0.678
Sb04g031960 Sorghum bicolor Sb04g031960 I 0.678
Si018039m.g Setaria italica Si018039m.g I 0.678
OS02G0676800 Oryza sativa OS02G0676800 I 0.678
ORUFI02G29210 Oryza rufipogon ORUFI02G29210 I 0.678
ONIVA02G30630 Oryza nivara ONIVA02G30630 I 0.678
OPUNC02G25450 Oryza punctata OPUNC02G25450 I 0.678
OGLUM02G28310 Oryza glumaepatula OGLUM02G28310 I 0.678