MTR_3g088615 (Medicago truncatula)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 MTR_3g088615 T254754_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.875 0.875
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.854 0.854
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.812 0.812
O82695_MALDO
M11019_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH35349 MADS box 10 57

Links

Other MADS box family TFs
Other Medicago truncatula TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_03887 Cicer arietinum Ca_03887 I 1.000
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.958
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.958
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.917
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.917
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.917
Ca_13111 Cicer arietinum Ca_13111 I 0.896
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.875
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.854
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.854
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.854
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.854
29648.m001978 Ricinus communis 29648.m001978 I 0.854
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.854
Cla023547 Citrullus lanatus Cla023547 I 0.854
TCM_035212 Theobroma cacao TCM_035212 I 0.854
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.854
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.854
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.854
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.854
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.833
PI Vitis vinifera VIT_18s0001g01760 I 0.833
mgf006158m Mimulus guttatus mgf006158m I 0.833
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.833
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.833
mgf008207m Mimulus guttatus mgf008207m I 0.833
mgf003143m Mimulus guttatus mgf003143m I 0.833
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.812
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.812
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.812
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.812
Pm004718 Prunus mume Pm004718 I 0.812
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.812
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.812
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.792
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.792
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.792
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.792
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.792
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.792
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.771
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.771
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.729
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.729
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.729
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.729
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.729
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.729
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.729
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.729
GSMUA_Achr3G02280_001 Musa acuminata GSMUA_Achr3G02280_001 I 0.729
AMTR_s00089p00081270 Amborella trichopoda AMTR_s00089p00081270 I 0.729
Ca_01994 Cicer arietinum Ca_01994 I 0.729
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.729
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.729
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.729
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.727
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.720
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.714
GRMZM2G147716 Zea mays GRMZM2G147716 I 0.708
CAL Arabidopsis thaliana AT1G26310 I 0.708
SapurV1A.0168s0400 Salix purpurea SapurV1A.0168s0400 I 0.708
O82695_MALDO Malus domestica O82695_MALDO D 0.708
GSMUA_Achr10G18600_001 Musa acuminata GSMUA_Achr10G18600_001 I 0.708
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.708
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.708
Eucgr.B00634 Eucalyptus grandis Eucgr.B00634 I 0.708
MDP0000013331 Malus domestica MDP0000013331 I 0.708
MDP0000269921 Malus domestica MDP0000269921 I 0.708
BRADI1G21980 Brachypodium distachyon BRADI1G21980 I 0.708
GSMUA_Achr6G00050_001 Musa acuminata GSMUA_Achr6G00050_001 I 0.708
Sb02g038780 Sorghum bicolor Sb02g038780 I 0.708
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.708
Cla022374 Citrullus lanatus Cla022374 I 0.708
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.708
AP3 Vitis vinifera VIT_18s0001g13460 I 0.708
CAL Arabidopsis lyrata scaffold_102909.1 I 0.708
Si030896m.g Setaria italica Si030896m.g I 0.708
TRAES3BF021600020CFD_g Triticum aestivum TRAES3BF021600020CFD_g I 0.708
TRIUR3_15782 Triticum urartu TRIUR3_15782 I 0.708
Pm006266 Prunus mume Pm006266 I 0.708
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.708
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.708
Bostr.12659s0367 Boechera stricta Bostr.12659s0367 I 0.708
Cagra.6677s0007 Capsella grandiflora Cagra.6677s0007 I 0.708
Carubv10011954m.g Capsella rubella Carubv10011954m.g I 0.708
Cucsa.327980 Cucumis sativus Cucsa.327980 I 0.708
MLOC_59262 Hordeum vulgare MLOC_59262 I 0.708
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.708
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.708
MTR_5g046790 Medicago truncatula MTR_5g046790 I 0.708
TCM_000266 Theobroma cacao TCM_000266 I 0.708
Pm026712 Prunus mume Pm026712 I 0.702