cassava33721.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava33721.m1 T257219_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.917 0.917
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.896 0.896
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.875 0.875
PI
M08148_2.00 		Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA0559.1 		0.792 0.792
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.750 0.750
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.750 0.750
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.750 0.750
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.729 0.729
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.729 0.729
Q9ZRA5_MALDO
M11030_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_04 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava33721.m1 MADS box 10 57

Links

Other MADS box family TFs
Other Manihot esculenta TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.979
TCM_035212 Theobroma cacao TCM_035212 I 0.958
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.958
29648.m001978 Ricinus communis 29648.m001978 I 0.938
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.938
PI Vitis vinifera VIT_18s0001g01760 I 0.938
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.917
Pm004718 Prunus mume Pm004718 I 0.917
Cla023547 Citrullus lanatus Cla023547 I 0.917
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.917
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.917
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.917
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.917
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.917
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.917
mgf008207m Mimulus guttatus mgf008207m I 0.896
Ca_13111 Cicer arietinum Ca_13111 I 0.896
mgf003143m Mimulus guttatus mgf003143m I 0.896
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.896
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.896
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.896
mgf006158m Mimulus guttatus mgf006158m I 0.896
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.896
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.875
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.875
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.875
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.875
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.875
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.875
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.875
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.875
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.875
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.854
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.854
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.854
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.854
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.854
Ca_03887 Cicer arietinum Ca_03887 I 0.833
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.833
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.833
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.812
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.812
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.800
TCM_000266 Theobroma cacao TCM_000266 I 0.792
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.792
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.792
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.792
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.792
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.792
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.792
Bo3g010390 Brassica oleracea Bo3g010390 I 0.792
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.792
PI Arabidopsis thaliana AT5G20240 D 0.792
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.792
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.771
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.771
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.771
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.771
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.771
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.771
Pm006266 Prunus mume Pm006266 I 0.771
Ca_04909 Cicer arietinum Ca_04909 I 0.771
AP3 Vitis vinifera VIT_18s0001g13460 I 0.771
Cla021117 Citrullus lanatus Cla021117 I 0.771
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.771
Bo9g152080 Brassica oleracea Bo9g152080 I 0.771
Bra002285 Brassica rapa Bra002285 I 0.771
Bra006549 Brassica rapa Bra006549 I 0.771
Bra020093 Brassica rapa Bra020093 I 0.771
Bo2g020730 Brassica oleracea Bo2g020730 I 0.771
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.771
Bo3g014100 Brassica oleracea Bo3g014100 I 0.771
Pm026712 Prunus mume Pm026712 I 0.766
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.750
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.750
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.750
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.750
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.750
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.750
AP3 Arabidopsis thaliana AT3G54340 D 0.750
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.750
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.750
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.750
MDP0000184294 Malus domestica MDP0000184294 I 0.750
MDP0000224779 Malus domestica MDP0000224779 I 0.750
MDP0000315938 Malus domestica MDP0000315938 I 0.750
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.750
MDP0000133037 Malus domestica MDP0000133037 I 0.750
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.750
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.750
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.750
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.750
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.750
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.750
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.750
29782.m000119 Ricinus communis 29782.m000119 I 0.750
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.750
Ca_01994 Cicer arietinum Ca_01994 I 0.750
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.750
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.750
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.750
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.750
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.750
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.750
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.750
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.750
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.729
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.729
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.729
Bra014822 Brassica rapa Bra014822 I 0.729
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.729
Bra007067 Brassica rapa Bra007067 I 0.729
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.729
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.729
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.729
Si007221m.g Setaria italica Si007221m.g I 0.729
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.729
Bo4g120010 Brassica oleracea Bo4g120010 I 0.729
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.729
Bo8g083600 Brassica oleracea Bo8g083600 I 0.729
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.729
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.729
OBART06G27230 Oryza barthii OBART06G27230 I 0.729
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.729
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.729
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.729
OB06G35020 Oryza brachyantha OB06G35020 I 0.729
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.729
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.729
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.729
MADS16 Oryza sativa OS06G0712700 D 0.729
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.729
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.729
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.729
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.729
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.729
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.729
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.729
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.729
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.729
AMTR_s00089p00081270 Amborella trichopoda AMTR_s00089p00081270 I 0.708
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.708
Q9ZRA5_MALDO Malus domestica Q9ZRA5_MALDO D 0.708
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.708
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.708
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.708
mgf015533m Mimulus guttatus mgf015533m I 0.708
Pm018087 Prunus mume Pm018087 I 0.708
PRUPE_ppa019932mg Prunus persica PRUPE_ppa019932mg I 0.708
Aquca_014_00308 Aquilegia coerulea Aquca_014_00308 I 0.708
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.708
MDP0000289836 Malus domestica MDP0000289836 I 0.708
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.708
GSMUA_Achr3G02280_001 Musa acuminata GSMUA_Achr3G02280_001 I 0.708
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.708