SapurV1A.2002s0050 (Salix purpurea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 SapurV1A.2002s0050 T259072_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.917 0.917
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.833 0.833
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.833 0.833
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.812 0.812
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.771 0.771
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.750 0.750
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.2002s0050.1.p MADS box 10 57

Links

Other MADS box family TFs
Other Salix purpurea TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.979
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.979
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.979
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.958
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.938
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.938
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.917
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.917
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.917
MDP0000315938 Malus domestica MDP0000315938 I 0.917
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.917
MDP0000184294 Malus domestica MDP0000184294 I 0.917
MDP0000224779 Malus domestica MDP0000224779 I 0.896
29782.m000119 Ricinus communis 29782.m000119 I 0.896
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.896
MDP0000133037 Malus domestica MDP0000133037 I 0.896
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.896
Pm026712 Prunus mume Pm026712 I 0.894
Cla021117 Citrullus lanatus Cla021117 I 0.875
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.875
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.875
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.875
Ca_01994 Cicer arietinum Ca_01994 I 0.875
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.875
TCM_000266 Theobroma cacao TCM_000266 I 0.875
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.875
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.875
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.875
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.875
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.854
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.854
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.854
AP3 Vitis vinifera VIT_18s0001g13460 I 0.854
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.854
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.854
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.854
Ca_04909 Cicer arietinum Ca_04909 I 0.854
AP3 Arabidopsis thaliana AT3G54340 D 0.833
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.833
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.833
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.833
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.833
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.833
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.833
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.833
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.833
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.833
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.812
Solyc04g081000.2 Solanum lycopersicum Solyc04g081000.2 I 0.812
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.812
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.812
Bra014822 Brassica rapa Bra014822 I 0.812
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.812
mgf015533m Mimulus guttatus mgf015533m I 0.812
Bra007067 Brassica rapa Bra007067 I 0.812
Bo8g083600 Brassica oleracea Bo8g083600 I 0.812
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.812
Bo4g120010 Brassica oleracea Bo4g120010 I 0.812
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.812
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.812
PGSC0003DMG400003709 Solanum tuberosum PGSC0003DMG400003709 I 0.812
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.812
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.812
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.812
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.812
Eucgr.I02376 Eucalyptus grandis Eucgr.I02376 I 0.812
Pm006266 Prunus mume Pm006266 I 0.792
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.792
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.792
AP3 Populus trichocarpa POPTR_0002s02990 I 0.792
TCM_034148 Theobroma cacao TCM_034148 I 0.792
mgf000046m Mimulus guttatus mgf000046m I 0.787
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.771
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.771
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.771
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.760
SapurV1A.0025s0830 Salix purpurea SapurV1A.0025s0830 I 0.750
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.750
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.750
OBART06G27230 Oryza barthii OBART06G27230 I 0.750
OB06G35020 Oryza brachyantha OB06G35020 I 0.750
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.750
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.750
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.750
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.750
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.750
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.750
Aquca_006_00074 Aquilegia coerulea Aquca_006_00074 I 0.750
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.750
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.750
Si007221m.g Setaria italica Si007221m.g I 0.750
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.750
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.750
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.750
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.750
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.750
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.750
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.750
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.750
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.750
MADS16 Oryza sativa OS06G0712700 D 0.750
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.750
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.750
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.729
orange1.1g024093m.g Citrus sinensis orange1.1g024093m.g I 0.729
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.729
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.729
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.729
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.729
Ciclev10009338m.g Citrus clementina Ciclev10009338m.g I 0.729
29648.m001978 Ricinus communis 29648.m001978 I 0.729
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.729
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.729
TCM_035212 Theobroma cacao TCM_035212 I 0.729
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.729
estExt_fgenesh1_pm.C_80015 Physcomitrella patens estExt_fgenesh1_pm.C_80015 I 0.729
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.729
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.729
OPUNC06G24880 Oryza punctata OPUNC06G24880 I 0.717
TCM_034501 Theobroma cacao TCM_034501 I 0.708
mgf025830m Mimulus guttatus mgf025830m I 0.708
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.708
AGL24 Arabidopsis thaliana AT4G24540 I 0.708
TT16 Vitis vinifera VIT_01s0011g01560 I 0.708
Ca_13111 Cicer arietinum Ca_13111 I 0.708
PI Vitis vinifera VIT_18s0001g01760 I 0.708
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.708
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.708
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I 0.708
Bra019221 Brassica rapa Bra019221 I 0.708
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.708
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.708
Cla014322 Citrullus lanatus Cla014322 I 0.708
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.708
Bo7g109590 Brassica oleracea Bo7g109590 I 0.708
Cla023547 Citrullus lanatus Cla023547 I 0.708
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.708
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.708
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.708
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.708
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.708
estExt_fgenesh1_kg.C_550007 Physcomitrella patens estExt_fgenesh1_kg.C_550007 I 0.708
estExt_fgenesh1_kg.C_260002 Physcomitrella patens estExt_fgenesh1_kg.C_260002 I 0.708
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.708
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.708
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.708
Aquca_009_00337 Aquilegia coerulea Aquca_009_00337 I 0.708
Pm004718 Prunus mume Pm004718 I 0.708
Pm002166 Prunus mume Pm002166 I 0.708
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.708
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.708
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.708
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.708
estExt_Genewise1.C_80073 Physcomitrella patens estExt_Genewise1.C_80073 I 0.708