Eucgr.F01615 (Eucalyptus grandis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Eucgr.F01615 T257964_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.938 0.938
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.854 0.854
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.854 0.854
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.833 0.833
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.771 0.771
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.729 0.729
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.708 0.708
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.708 0.708
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.708 0.708
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.708 0.708
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.708 0.708
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.708 0.708
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.708 0.708
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.708 0.708
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.708 0.708
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.708 0.708
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.F01615.1 MADS box 10 57

Links

Other MADS box family TFs
Other Eucalyptus grandis TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.958
Ca_04909 Cicer arietinum Ca_04909 I 0.958
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.958
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.958
Cla021117 Citrullus lanatus Cla021117 I 0.938
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.938
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.938
Solyc04g081000.2 Solanum lycopersicum Solyc04g081000.2 I 0.917
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.917
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.917
PGSC0003DMG400003709 Solanum tuberosum PGSC0003DMG400003709 I 0.917
mgf015533m Mimulus guttatus mgf015533m I 0.896
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.896
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.896
TCM_034148 Theobroma cacao TCM_034148 I 0.896
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.896
AP3 Vitis vinifera VIT_18s0001g13460 I 0.896
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.875
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.875
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.875
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.854
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.854
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.854
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.854
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.854
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.854
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.854
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.854
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.854
AP3 Arabidopsis thaliana AT3G54340 D 0.854
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.833
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.833
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.833
TCM_000266 Theobroma cacao TCM_000266 I 0.833
mgf000046m Mimulus guttatus mgf000046m I 0.833
Bo4g120010 Brassica oleracea Bo4g120010 I 0.833
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.833
Bo8g083600 Brassica oleracea Bo8g083600 I 0.833
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.833
Bra007067 Brassica rapa Bra007067 I 0.833
Bra014822 Brassica rapa Bra014822 I 0.833
MDP0000184294 Malus domestica MDP0000184294 I 0.833
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.833
Pm026712 Prunus mume Pm026712 I 0.833
MDP0000133037 Malus domestica MDP0000133037 I 0.833
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.833
MDP0000224779 Malus domestica MDP0000224779 I 0.833
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.833
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.833
Pm006266 Prunus mume Pm006266 I 0.833
MDP0000315938 Malus domestica MDP0000315938 I 0.833
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.812
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.812
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.812
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.812
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.812
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.812
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.812
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.812
29782.m000119 Ricinus communis 29782.m000119 I 0.792
Eucgr.I02376 Eucalyptus grandis Eucgr.I02376 I 0.792
orange1.1g024093m.g Citrus sinensis orange1.1g024093m.g I 0.792
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.792
Ciclev10009338m.g Citrus clementina Ciclev10009338m.g I 0.792
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.792
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.792
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.792
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.792
Ca_01994 Cicer arietinum Ca_01994 I 0.792
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.792
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.792
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.771
MADS16 Oryza sativa OS06G0712700 D 0.771
AP3 Populus trichocarpa POPTR_0002s02990 I 0.771
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.771
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.771
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.771
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.771
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.771
Si007221m.g Setaria italica Si007221m.g I 0.771
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.771
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.771
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.771
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.771
OBART06G27230 Oryza barthii OBART06G27230 I 0.771
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.771
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.771
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.771
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.771
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.771
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.771
OB06G35020 Oryza brachyantha OB06G35020 I 0.771
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.771
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.771
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.771
F775_30609 Aegilops tauschii F775_30609 I 0.759
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.750
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.750
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.729
Solyc07g055920.2 Solanum lycopersicum Solyc07g055920.2 I 0.729
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.729
orange1.1g036452m.g Citrus sinensis orange1.1g036452m.g I 0.729
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.729
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.729
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.729
GLYMA04G43640 Glycine max GLYMA04G43640 I 0.729
TT16 Vitis vinifera VIT_01s0011g01560 I 0.729
SapurV1A.2206s0010 Salix purpurea SapurV1A.2206s0010 I 0.729
SapurV1A.0383s0080 Salix purpurea SapurV1A.0383s0080 I 0.729
PGSC0003DMG400017295 Solanum tuberosum PGSC0003DMG400017295 I 0.729
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.729
SapurV1A.0025s0830 Salix purpurea SapurV1A.0025s0830 I 0.729
POPTR_0013s09960 Populus trichocarpa POPTR_0013s09960 I 0.729
PK24532.1 Cannabis sativa PK24532.1 I 0.708
Eucgr.K01195 Eucalyptus grandis Eucgr.K01195 I 0.708
AMTR_s00021p00254030 Amborella trichopoda AMTR_s00021p00254030 I 0.708
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.708
Eucgr.F02981 Eucalyptus grandis Eucgr.F02981 I 0.708
PK15717.1 Cannabis sativa PK15717.1 I 0.708
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.708
GLYMA15G09500 Glycine max GLYMA15G09500 I 0.708
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.708
GRMZM2G052890 Zea mays GRMZM2G052890 I 0.708
evm.TU.supercontig_50.73 Carica papaya evm.TU.supercontig_50.73 I 0.708
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.708
GSMUA_Achr10G21480_001 Musa acuminata GSMUA_Achr10G21480_001 I 0.708
Bostr.30275s0374 Boechera stricta Bostr.30275s0374 I 0.708
LPERR01G06160 Leersia perrieri LPERR01G06160 I 0.708
LPERR02G04610 Leersia perrieri LPERR02G04610 I 0.708
LPERR05G05550 Leersia perrieri LPERR05G05550 I 0.708
chr6.CM0836.320.nc Lotus japonicus chr6.CM0836.320.nc I 0.708
chr6.CM0118.440.nd Lotus japonicus chr6.CM0118.440.nd I 0.708
Cagra.9536s0004 Capsella grandiflora Cagra.9536s0004 I 0.708
Carubv10005558m.g Capsella rubella Carubv10005558m.g I 0.708
GSMUA_Achr2G02660_001 Musa acuminata GSMUA_Achr2G02660_001 I 0.708
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.708
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.708
chr3.CM0129.40.nc Lotus japonicus chr3.CM0129.40.nc I 0.708
GSMUA_Achr5G16870_001 Musa acuminata GSMUA_Achr5G16870_001 I 0.708
Ciclev10033176m.g Citrus clementina Ciclev10033176m.g I 0.708
GLYMA06G48270 Glycine max GLYMA06G48270 I 0.708
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.708
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.708
Bra000392 Brassica rapa Bra000392 I 0.708
orange1.1g038783m.g Citrus sinensis orange1.1g038783m.g I 0.708
BGIOSGA007056 Oryza indica BGIOSGA007056 I 0.708
SapurV1A.0157s0170 Salix purpurea SapurV1A.0157s0170 I 0.708
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.708
Pavir.Ca00579 Panicum virgatum Pavir.Ca00579 I 0.708
Pavir.Eb00241 Panicum virgatum Pavir.Eb00241 I 0.708
Pavir.J04815 Panicum virgatum Pavir.J04815 I 0.708
Bo1g020110 Brassica oleracea Bo1g020110 I 0.708
Pavir.Ea00226 Panicum virgatum Pavir.Ea00226 I 0.708
Bo4g195720 Brassica oleracea Bo4g195720 I 0.708
Bra012564 Brassica rapa Bra012564 I 0.708
mgf025830m Mimulus guttatus mgf025830m I 0.708
Thhalv10026704m.g Eutrema salsugineum Thhalv10026704m.g I 0.708
Gorai.N017200 Gossypium raimondii Gorai.N017200 I 0.708
Gorai.012G042600 Gossypium raimondii Gorai.012G042600 I 0.708
Bo3g157470 Brassica oleracea Bo3g157470 I 0.708
Gorai.009G265100 Gossypium raimondii Gorai.009G265100 I 0.708
AG Arabidopsis thaliana AT4G18960 D 0.708
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.708
SapurV1A.0945s0100 Salix purpurea SapurV1A.0945s0100 I 0.708
Bra013364 Brassica rapa Bra013364 I 0.708
BRADI2G32910 Brachypodium distachyon BRADI2G32910 I 0.708
F775_27566 Aegilops tauschii F775_27566 I 0.708
BGIOSGA002178 Oryza indica BGIOSGA002178 I 0.708
GLYMA13G29510 Glycine max GLYMA13G29510 I 0.708
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.708
TCM_001841 Theobroma cacao TCM_001841 I 0.708
TCM_029596 Theobroma cacao TCM_029596 I 0.708
OMERI01G06630 Oryza meridionalis OMERI01G06630 I 0.708
OMERI02G06250 Oryza meridionalis OMERI02G06250 I 0.708
ONIVA01G08650 Oryza nivara ONIVA01G08650 I 0.708
ONIVA02G05710 Oryza nivara ONIVA02G05710 I 0.708
Si018183m.g Setaria italica Si018183m.g I 0.708
Si023516m.g Setaria italica Si023516m.g I 0.708
TCM_035212 Theobroma cacao TCM_035212 I 0.708
TCM_036541 Theobroma cacao TCM_036541 I 0.708
OGLUM02G05240 Oryza glumaepatula OGLUM02G05240 I 0.708
AG Vitis vinifera VIT_10s0003g02070 I 0.708
VIT_12s0142g00360 Vitis vinifera VIT_12s0142g00360 I 0.708
TRIUR3_34584 Triticum urartu TRIUR3_34584 I 0.708
OLONG_001300 Oryza longistaminata OLONG_001300 I 0.708
Traes_3AS_55E9080C2 Triticum aestivum Traes_3AS_55E9080C2 I 0.708
Traes_3DS_51A589227 Triticum aestivum Traes_3DS_51A589227 I 0.708
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.708
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.708
ORGLA01G0061900 Oryza glaberrima ORGLA01G0061900 I 0.708
OPUNC06G24880 Oryza punctata OPUNC06G24880 I 0.708
POPTR_0011s03150 Populus trichocarpa POPTR_0011s03150 I 0.708
ORGLA02G0049700 Oryza glaberrima ORGLA02G0049700 I 0.708
ORUFI01G07080 Oryza rufipogon ORUFI01G07080 I 0.708
MADS29 Oryza sativa OS02G0170300 I 0.708
ORUFI02G05500 Oryza rufipogon ORUFI02G05500 I 0.708
OPUNC05G06200 Oryza punctata OPUNC05G06200 I 0.708
PRUPE_ppa019932mg Prunus persica PRUPE_ppa019932mg I 0.708
AG Arabidopsis lyrata scaffold_702516.1 I 0.708
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.708
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.708
Sb09g006360 Sorghum bicolor Sb09g006360 I 0.708
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.708
OPUNC02G04560 Oryza punctata OPUNC02G04560 I 0.708
Sb03g002525 Sorghum bicolor Sb03g002525 I 0.708
OGLUM01G07510 Oryza glumaepatula OGLUM01G07510 I 0.708
Ca_00445 Cicer arietinum Ca_00445 I 0.708
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.708
Cucsa.047280 Cucumis sativus Cucsa.047280 I 0.708
Cucsa.061700 Cucumis sativus Cucsa.061700 I 0.708
MTR_2g017865 Medicago truncatula MTR_2g017865 I 0.708
MTR_3g005530 Medicago truncatula MTR_3g005530 I 0.708
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.708
cassava23035.valid.m1 Manihot esculenta cassava23035.valid.m1 I 0.708
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.708
Cucsa.212720 Cucumis sativus Cucsa.212720 I 0.708
MADS3_ORYSJ Oryza sativa MADS3_ORYSJ D 0.708
M17_MAIZE Zea mays M17_MAIZE D 0.708
mgf000475m Mimulus guttatus mgf000475m I 0.708
mgf003296m Mimulus guttatus mgf003296m I 0.708
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.708
OS01G0201700 Oryza sativa OS01G0201700 I 0.708
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.708
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.708
cassava21103.m1 Manihot esculenta cassava21103.m1 I 0.708
cassava21102.m1 Manihot esculenta cassava21102.m1 I 0.708
OB05G16140 Oryza brachyantha OB05G16140 I 0.708
AG_PETHY Petunia x hybrida AG_PETHY D 0.708
Pm018087 Prunus mume Pm018087 I 0.708
OBART01G06520 Oryza barthii OBART01G06520 I 0.708
OBART02G05380 Oryza barthii OBART02G05380 I 0.708
Cla009886 Citrullus lanatus Cla009886 I 0.708
mgf012166m Mimulus guttatus mgf012166m I 0.708
AG_TOBAC Nicotiana tabacum AG_TOBAC D 0.708
OB01G16550 Oryza brachyantha OB01G16550 I 0.708
cassava10048.m1 Manihot esculenta cassava10048.m1 I 0.708
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.708
29648.m001978 Ricinus communis 29648.m001978 I 0.708
OB02G14670 Oryza brachyantha OB02G14670 I 0.708
Q08711_PETHY Petunia x hybrida Q08711_PETHY D 0.708
GLYMA12G13560 Glycine max GLYMA12G13560 I 0.700
GLYMA16G17450 Glycine max GLYMA16G17450 I 0.700
GLYMA03G26261 Glycine max GLYMA03G26261 I 0.700