CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc04g081000.2
(
Solanum lycopersicum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Solyc04g081000.2
T256342_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q40513_TOBAC
M11001_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DEF_01
0.958
0.958
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.833
0.833
AP3
M10919_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.833
0.833
Q8VWZ4_MALDO
M11026_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS13_01
0.792
0.792
MADS16
M10971_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.771
0.771
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.708
0.708
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.708
0.708
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.708
0.708
M17_MAIZE
M10959_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc04g081000.2.1
MADS box
10
57
KIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIVMISSTGKLHEF
Links
Other
MADS box
family TFs
Other
Solanum lycopersicum
TFs
153 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PGSC0003DMG400003709
Solanum tuberosum
PGSC0003DMG400003709
I
1.000
Q40513_TOBAC
Nicotiana tabacum
Q40513_TOBAC
D
0.958
Lus10033187.g
Linum usitatissimum
Lus10033187.g
I
0.917
Eucgr.F01615
Eucalyptus grandis
Eucgr.F01615
I
0.917
mgf000046m
Mimulus guttatus
mgf000046m
I
0.915
Cla021117
Citrullus lanatus
Cla021117
I
0.896
Cucsa.342790
Cucumis sativus
Cucsa.342790
I
0.896
MTR_3g113030
Medicago truncatula
MTR_3g113030
I
0.896
mgf015533m
Mimulus guttatus
mgf015533m
I
0.896
chr1.CM0195.210.nc
Lotus japonicus
chr1.CM0195.210.nc
I
0.896
Lus10031960.g
Linum usitatissimum
Lus10031960.g
I
0.896
Lus10010630.g
Linum usitatissimum
Lus10010630.g
I
0.896
GLYMA06G02990
Glycine max
GLYMA06G02990
I
0.896
Ca_04909
Cicer arietinum
Ca_04909
I
0.896
GLYMA04G02980
Glycine max
GLYMA04G02980
I
0.875
Gorai.003G011500
Gossypium raimondii
Gorai.003G011500
I
0.875
TCM_034148
Theobroma cacao
TCM_034148
I
0.875
Gorai.009G271100
Gossypium raimondii
Gorai.009G271100
I
0.875
evm.TU.supercontig_6.202
Carica papaya
evm.TU.supercontig_6.202
I
0.854
evm.TU.supercontig_6.199
Carica papaya
evm.TU.supercontig_6.199
I
0.854
Bra014822
Brassica rapa
Bra014822
I
0.854
Bo8g083600
Brassica oleracea
Bo8g083600
I
0.854
AP3
Vitis vinifera
VIT_18s0001g13460
I
0.854
Thhalv10010683m.g
Eutrema salsugineum
Thhalv10010683m.g
I
0.854
Bra007067
Brassica rapa
Bra007067
I
0.854
Bo4g120010
Brassica oleracea
Bo4g120010
I
0.854
cassava41235.m1
Manihot esculenta
cassava41235.m1
I
0.833
cassava37822.valid.m1
Manihot esculenta
cassava37822.valid.m1
I
0.833
cassava37821.valid.m1
Manihot esculenta
cassava37821.valid.m1
I
0.833
TCM_000266
Theobroma cacao
TCM_000266
I
0.833
Carubv10018833m.g
Capsella rubella
Carubv10018833m.g
I
0.833
AP3
Arabidopsis lyrata
fgenesh2_kg.5__1825__AT3G54340.1
I
0.833
AP3
Arabidopsis thaliana
AT3G54340
D
0.833
Bostr.0697s0046
Boechera stricta
Bostr.0697s0046
I
0.833
Gorai.008G064900
Gossypium raimondii
Gorai.008G064900
I
0.833
Cagra.0562s0025
Capsella grandiflora
Cagra.0562s0025
I
0.833
SapurV1A.2002s0050
Salix purpurea
SapurV1A.2002s0050
I
0.812
orange1.1g040046m.g
Citrus sinensis
orange1.1g040046m.g
I
0.812
cassava33649.m1
Manihot esculenta
cassava33649.m1
I
0.812
Ciclev10002410m.g
Citrus clementina
Ciclev10002410m.g
I
0.812
cassava21176.m1
Manihot esculenta
cassava21176.m1
I
0.812
29782.m000119
Ricinus communis
29782.m000119
I
0.812
Pm026712
Prunus mume
Pm026712
I
0.809
MDP0000184294
Malus domestica
MDP0000184294
I
0.792
VIT_04s0023g02820
Vitis vinifera
VIT_04s0023g02820
I
0.792
MDP0000133037
Malus domestica
MDP0000133037
I
0.792
POPTR_0007s13660
Populus trichocarpa
POPTR_0007s13660
I
0.792
MDP0000224779
Malus domestica
MDP0000224779
I
0.792
Solyc02g084630.2
Solanum lycopersicum
Solyc02g084630.2
I
0.792
SapurV1A.0569s0080
Salix purpurea
SapurV1A.0569s0080
I
0.792
orange1.1g027470m.g
Citrus sinensis
orange1.1g027470m.g
I
0.792
MDP0000315938
Malus domestica
MDP0000315938
I
0.792
POPTR_0005s12000
Populus trichocarpa
POPTR_0005s12000
I
0.792
AP3
Populus trichocarpa
POPTR_0002s02990
I
0.792
Pm006266
Prunus mume
Pm006266
I
0.792
Q8VWZ4_MALDO
Malus domestica
Q8VWZ4_MALDO
D
0.792
gene14896-v1.0-hybrid
Fragaria vesca
gene14896-v1.0-hybrid
I
0.792
Ciclev10026433m.g
Citrus clementina
Ciclev10026433m.g
I
0.792
Eucgr.I02376
Eucalyptus grandis
Eucgr.I02376
I
0.792
PGSC0003DMG400003541
Solanum tuberosum
PGSC0003DMG400003541
I
0.792
OBART06G27230
Oryza barthii
OBART06G27230
I
0.771
OGLUM06G28660
Oryza glumaepatula
OGLUM06G28660
I
0.771
Pavir.Db00185
Panicum virgatum
Pavir.Db00185
I
0.771
BRADI1G35000
Brachypodium distachyon
BRADI1G35000
I
0.771
OB06G35020
Oryza brachyantha
OB06G35020
I
0.771
MLOC_31575
Hordeum vulgare
MLOC_31575
I
0.771
GSMUA_Achr9G20940_001
Musa acuminata
GSMUA_Achr9G20940_001
I
0.771
GRMZM2G139073
Zea mays
GRMZM2G139073
I
0.771
GSMUA_Achr9G20950_001
Musa acuminata
GSMUA_Achr9G20950_001
I
0.771
BGIOSGA020546
Oryza indica
BGIOSGA020546
I
0.771
LPERR06G22780
Leersia perrieri
LPERR06G22780
I
0.771
Ciclev10009338m.g
Citrus clementina
Ciclev10009338m.g
I
0.771
orange1.1g024093m.g
Citrus sinensis
orange1.1g024093m.g
I
0.771
Pavir.J11672
Panicum virgatum
Pavir.J11672
I
0.771
PRUPE_ppa010727mg
Prunus persica
PRUPE_ppa010727mg
I
0.771
Sb10g029810
Sorghum bicolor
Sb10g029810
I
0.771
Si007221m.g
Setaria italica
Si007221m.g
I
0.771
SapurV1A.0396s0210
Salix purpurea
SapurV1A.0396s0210
I
0.771
OMERI06G27290
Oryza meridionalis
OMERI06G27290
I
0.771
MADS16
Oryza sativa
OS06G0712700
D
0.771
ONIVA06G29820
Oryza nivara
ONIVA06G29820
I
0.771
ORGLA06G0229200
Oryza glaberrima
ORGLA06G0229200
I
0.771
ORUFI06G29170
Oryza rufipogon
ORUFI06G29170
I
0.771
OLONG_004226
Oryza longistaminata
OLONG_004226
I
0.771
PRUPE_ppa026083mg
Prunus persica
PRUPE_ppa026083mg
I
0.771
TRIUR3_29719
Triticum urartu
TRIUR3_29719
I
0.771
Traes_7DL_DDCC09B24
Triticum aestivum
Traes_7DL_DDCC09B24
I
0.771
Traes_7AL_1C76E543C
Triticum aestivum
Traes_7AL_1C76E543C
I
0.771
F775_30609
Aegilops tauschii
F775_30609
I
0.759
Aquca_007_00336
Aquilegia coerulea
Aquca_007_00336
I
0.750
SapurV1A.0025s0830
Salix purpurea
SapurV1A.0025s0830
I
0.750
Traes_7DS_366A869CF
Triticum aestivum
Traes_7DS_366A869CF
I
0.732
Aquca_006_00072
Aquilegia coerulea
Aquca_006_00072
I
0.729
AMTR_s00001p00217560
Amborella trichopoda
AMTR_s00001p00217560
I
0.729
chr2.CM0249.370.nd
Lotus japonicus
chr2.CM0249.370.nd
I
0.729
Cla006973
Citrullus lanatus
Cla006973
I
0.729
MTR_5g021270
Medicago truncatula
MTR_5g021270
I
0.729
Cucsa.194800
Cucumis sativus
Cucsa.194800
I
0.729
GLYMA11G07820
Glycine max
GLYMA11G07820
I
0.729
Ca_01994
Cicer arietinum
Ca_01994
I
0.729
GLYMA01G37470
Glycine max
GLYMA01G37470
I
0.729
Traes_7BL_7F4124E70
Triticum aestivum
Traes_7BL_7F4124E70
I
0.720
gene26118-v1.0-hybrid
Fragaria vesca
gene26118-v1.0-hybrid
I
0.714
LjT38P01.180.nd
Lotus japonicus
LjT38P01.180.nd
I
0.708
Lus10027404.g
Linum usitatissimum
Lus10027404.g
I
0.708
Lus10031665.g
Linum usitatissimum
Lus10031665.g
I
0.708
AMTR_s00066p00109320
Amborella trichopoda
AMTR_s00066p00109320
I
0.708
MDP0000135652
Malus domestica
MDP0000135652
I
0.708
Pavir.Ib00012
Panicum virgatum
Pavir.Ib00012
I
0.708
SapurV1A.1777s0020
Salix purpurea
SapurV1A.1777s0020
I
0.708
orange1.1g039982m.g
Citrus sinensis
orange1.1g039982m.g
I
0.708
Pavir.Aa03173
Panicum virgatum
Pavir.Aa03173
I
0.708
Pavir.Ab00475
Panicum virgatum
Pavir.Ab00475
I
0.708
SVP
Arabidopsis lyrata
fgenesh2_kg.4__174__AT2G22540.1
I
0.708
MDP0000144516
Malus domestica
MDP0000144516
I
0.708
SVP
Arabidopsis thaliana
AT2G22540
D
0.708
Lus10035942.g
Linum usitatissimum
Lus10035942.g
I
0.708
Thhalv10000308m.g
Eutrema salsugineum
Thhalv10000308m.g
I
0.708
Lus10025719.g
Linum usitatissimum
Lus10025719.g
I
0.708
GLYMA02G33040
Glycine max
GLYMA02G33040
I
0.708
Bo4g149800
Brassica oleracea
Bo4g149800
I
0.708
OGLUM02G05240
Oryza glumaepatula
OGLUM02G05240
I
0.708
SVP
Vitis vinifera
VIT_00s0313g00070
I
0.708
OMERI02G06250
Oryza meridionalis
OMERI02G06250
I
0.708
Pm018087
Prunus mume
Pm018087
I
0.708
Bo8g101000
Brassica oleracea
Bo8g101000
I
0.708
OB02G14670
Oryza brachyantha
OB02G14670
I
0.708
OBART02G05380
Oryza barthii
OBART02G05380
I
0.708
Si018183m.g
Setaria italica
Si018183m.g
I
0.708
Sb04g004736
Sorghum bicolor
Sb04g004736
I
0.708
ORGLA02G0049700
Oryza glaberrima
ORGLA02G0049700
I
0.708
OPUNC02G04560
Oryza punctata
OPUNC02G04560
I
0.708
ORUFI02G05500
Oryza rufipogon
ORUFI02G05500
I
0.708
MADS29
Oryza sativa
OS02G0170300
I
0.708
PRUPE_ppa019932mg
Prunus persica
PRUPE_ppa019932mg
I
0.708
POPTR_0007s14300
Populus trichocarpa
POPTR_0007s14300
I
0.708
Bra030228
Brassica rapa
Bra030228
I
0.708
e_gw1.171.4.1
Physcomitrella patens
e_gw1.171.4.1
I
0.708
Cagra.1080s0011
Capsella grandiflora
Cagra.1080s0011
I
0.708
M17_MAIZE
Zea mays
M17_MAIZE
D
0.708
Carubv10023941m.g
Capsella rubella
Carubv10023941m.g
I
0.708
LPERR02G04610
Leersia perrieri
LPERR02G04610
I
0.708
Bra038511
Brassica rapa
Bra038511
I
0.708
Ciclev10005698m.g
Citrus clementina
Ciclev10005698m.g
I
0.708
Bostr.19427s0024
Boechera stricta
Bostr.19427s0024
I
0.708
MTR_1g053070
Medicago truncatula
MTR_1g053070
I
0.708
e_gw1.55.13.1
Physcomitrella patens
e_gw1.55.13.1
I
0.708
e_gw1.209.37.1
Physcomitrella patens
e_gw1.209.37.1
I
0.708
estExt_fgenesh1_kg.C_260002
Physcomitrella patens
estExt_fgenesh1_kg.C_260002
I
0.708
fgenesh1_pg.scaffold_118000119
Physcomitrella patens
fgenesh1_pg.scaffold_118000119
I
0.708
ONIVA02G05710
Oryza nivara
ONIVA02G05710
I
0.708
fgenesh1_pg.scaffold_267000029
Physcomitrella patens
fgenesh1_pg.scaffold_267000029
I
0.708
BGIOSGA007056
Oryza indica
BGIOSGA007056
I
0.708