CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Aquca_006_00072
(
Aquilegia coerulea
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Aquca_006_00072
T257502_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q8VWZ4_MALDO
M11026_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS13_01
0.771
0.771
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.750
0.750
Q40513_TOBAC
M11001_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DEF_01
0.750
0.750
MADS16
M10971_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.750
0.750
AP3
M10919_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.750
0.750
Q9AVU7_MALDO
M11027_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.750
0.750
MADS2_PETHY
M10998_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.729
0.729
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_006_00072.1
MADS box
10
57
RIENSTNRQVTYSKRRAGIVKKAKELTVLCDAEVSLLMVSSTEKIHEY
Aquca_006_00072.2
MADS box
10
57
RIENSTNRQVTYSKRRAGIVKKAKELTVLCDAEVSLLMVSSTEKIHEY
Aquca_006_00072.3
MADS box
10
57
RIENSTNRQVTYSKRRAGIVKKAKELTVLCDAEVSLLMVSSTEKIHEY
Links
Other
MADS box
family TFs
Other
Aquilegia coerulea
TFs
126 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00001p00217560
Amborella trichopoda
AMTR_s00001p00217560
I
0.833
AP3
Vitis vinifera
VIT_18s0001g13460
I
0.812
Solyc02g084630.2
Solanum lycopersicum
Solyc02g084630.2
I
0.812
PGSC0003DMG400003541
Solanum tuberosum
PGSC0003DMG400003541
I
0.812
Ciclev10026433m.g
Citrus clementina
Ciclev10026433m.g
I
0.812
gene14896-v1.0-hybrid
Fragaria vesca
gene14896-v1.0-hybrid
I
0.812
Pm006266
Prunus mume
Pm006266
I
0.812
Traes_7BL_7F4124E70
Triticum aestivum
Traes_7BL_7F4124E70
I
0.800
Aquca_007_00336
Aquilegia coerulea
Aquca_007_00336
I
0.792
PRUPE_ppa026083mg
Prunus persica
PRUPE_ppa026083mg
I
0.792
mgf015533m
Mimulus guttatus
mgf015533m
I
0.792
AP3
Populus trichocarpa
POPTR_0002s02990
I
0.792
VIT_04s0023g02820
Vitis vinifera
VIT_04s0023g02820
I
0.792
GSMUA_Achr9G20950_001
Musa acuminata
GSMUA_Achr9G20950_001
I
0.792
cassava33649.m1
Manihot esculenta
cassava33649.m1
I
0.792
Gorai.008G064900
Gossypium raimondii
Gorai.008G064900
I
0.792
orange1.1g027470m.g
Citrus sinensis
orange1.1g027470m.g
I
0.792
GSMUA_Achr9G20940_001
Musa acuminata
GSMUA_Achr9G20940_001
I
0.792
BRADI1G35000
Brachypodium distachyon
BRADI1G35000
I
0.771
cassava21176.m1
Manihot esculenta
cassava21176.m1
I
0.771
Si007221m.g
Setaria italica
Si007221m.g
I
0.771
Cla021117
Citrullus lanatus
Cla021117
I
0.771
Ca_04909
Cicer arietinum
Ca_04909
I
0.771
SapurV1A.2002s0050
Salix purpurea
SapurV1A.2002s0050
I
0.771
Q8VWZ4_MALDO
Malus domestica
Q8VWZ4_MALDO
D
0.771
Cucsa.342790
Cucumis sativus
Cucsa.342790
I
0.771
chr1.CM0195.210.nc
Lotus japonicus
chr1.CM0195.210.nc
I
0.771
MDP0000315938
Malus domestica
MDP0000315938
I
0.771
Lus10031960.g
Linum usitatissimum
Lus10031960.g
I
0.771
Lus10033187.g
Linum usitatissimum
Lus10033187.g
I
0.771
MDP0000133037
Malus domestica
MDP0000133037
I
0.771
Lus10010630.g
Linum usitatissimum
Lus10010630.g
I
0.771
AMTR_s00066p00109320
Amborella trichopoda
AMTR_s00066p00109320
I
0.771
MDP0000224779
Malus domestica
MDP0000224779
I
0.771
evm.TU.supercontig_6.199
Carica papaya
evm.TU.supercontig_6.199
I
0.771
evm.TU.supercontig_6.202
Carica papaya
evm.TU.supercontig_6.202
I
0.771
MDP0000184294
Malus domestica
MDP0000184294
I
0.771
29648.m001978
Ricinus communis
29648.m001978
I
0.771
POPTR_0005s12000
Populus trichocarpa
POPTR_0005s12000
I
0.771
GLYMA06G02990
Glycine max
GLYMA06G02990
I
0.771
MTR_3g113030
Medicago truncatula
MTR_3g113030
I
0.771
PRUPE_ppa010727mg
Prunus persica
PRUPE_ppa010727mg
I
0.771
Pm026712
Prunus mume
Pm026712
I
0.766
Eucgr.F01615
Eucalyptus grandis
Eucgr.F01615
I
0.750
Eucgr.I02376
Eucalyptus grandis
Eucgr.I02376
I
0.750
OGLUM06G28660
Oryza glumaepatula
OGLUM06G28660
I
0.750
OLONG_004226
Oryza longistaminata
OLONG_004226
I
0.750
Carubv10018833m.g
Capsella rubella
Carubv10018833m.g
I
0.750
ONIVA06G29820
Oryza nivara
ONIVA06G29820
I
0.750
Cucsa.018420
Cucumis sativus
Cucsa.018420
I
0.750
cassava41235.m1
Manihot esculenta
cassava41235.m1
I
0.750
BGIOSGA020546
Oryza indica
BGIOSGA020546
I
0.750
OMERI06G27290
Oryza meridionalis
OMERI06G27290
I
0.750
OBART06G27230
Oryza barthii
OBART06G27230
I
0.750
Cagra.0562s0025
Capsella grandiflora
Cagra.0562s0025
I
0.750
AP3
Arabidopsis thaliana
AT3G54340
D
0.750
OB06G35020
Oryza brachyantha
OB06G35020
I
0.750
Q9AVU7_MALDO
Malus domestica
Q9AVU7_MALDO
D
0.750
GLYMA04G02980
Glycine max
GLYMA04G02980
I
0.750
SapurV1A.0025s0830
Salix purpurea
SapurV1A.0025s0830
I
0.750
SapurV1A.0396s0210
Salix purpurea
SapurV1A.0396s0210
I
0.750
AP3
Arabidopsis lyrata
fgenesh2_kg.5__1825__AT3G54340.1
I
0.750
SapurV1A.0569s0080
Salix purpurea
SapurV1A.0569s0080
I
0.750
Pavir.J11672
Panicum virgatum
Pavir.J11672
I
0.750
Pavir.Db00185
Panicum virgatum
Pavir.Db00185
I
0.750
cassava37822.valid.m1
Manihot esculenta
cassava37822.valid.m1
I
0.750
Gorai.005G087600
Gossypium raimondii
Gorai.005G087600
I
0.750
MLOC_31575
Hordeum vulgare
MLOC_31575
I
0.750
LPERR06G22780
Leersia perrieri
LPERR06G22780
I
0.750
GRMZM2G139073
Zea mays
GRMZM2G139073
I
0.750
Gorai.003G011500
Gossypium raimondii
Gorai.003G011500
I
0.750
Bostr.0697s0046
Boechera stricta
Bostr.0697s0046
I
0.750
PI
Vitis vinifera
VIT_18s0001g01760
I
0.750
Q40513_TOBAC
Nicotiana tabacum
Q40513_TOBAC
D
0.750
MADS16
Oryza sativa
OS06G0712700
D
0.750
TCM_000266
Theobroma cacao
TCM_000266
I
0.750
TRIUR3_29719
Triticum urartu
TRIUR3_29719
I
0.750
Traes_7AL_1C76E543C
Triticum aestivum
Traes_7AL_1C76E543C
I
0.750
Traes_7DL_DDCC09B24
Triticum aestivum
Traes_7DL_DDCC09B24
I
0.750
TCM_035212
Theobroma cacao
TCM_035212
I
0.750
Cla023547
Citrullus lanatus
Cla023547
I
0.750
POPTR_0007s13660
Populus trichocarpa
POPTR_0007s13660
I
0.750
ORGLA06G0229200
Oryza glaberrima
ORGLA06G0229200
I
0.750
cassava37821.valid.m1
Manihot esculenta
cassava37821.valid.m1
I
0.750
29782.m000119
Ricinus communis
29782.m000119
I
0.750
cassava32003.m1
Manihot esculenta
cassava32003.m1
I
0.750
ORUFI06G29170
Oryza rufipogon
ORUFI06G29170
I
0.750
Sb10g029810
Sorghum bicolor
Sb10g029810
I
0.750
POPTR_0002s07920
Populus trichocarpa
POPTR_0002s07920
I
0.729
Gorai.009G271100
Gossypium raimondii
Gorai.009G271100
I
0.729
MTR_5g021270
Medicago truncatula
MTR_5g021270
I
0.729
Solyc04g081000.2
Solanum lycopersicum
Solyc04g081000.2
I
0.729
Thhalv10010683m.g
Eutrema salsugineum
Thhalv10010683m.g
I
0.729
chr2.CM0249.370.nd
Lotus japonicus
chr2.CM0249.370.nd
I
0.729
GLYMA01G37470
Glycine max
GLYMA01G37470
I
0.729
Bra007067
Brassica rapa
Bra007067
I
0.729
orange1.1g024093m.g
Citrus sinensis
orange1.1g024093m.g
I
0.729
orange1.1g040046m.g
Citrus sinensis
orange1.1g040046m.g
I
0.729
GLYMA11G07820
Glycine max
GLYMA11G07820
I
0.729
Ca_01994
Cicer arietinum
Ca_01994
I
0.729
MADS2_PETHY
Petunia x hybrida
MADS2_PETHY
D
0.729
Bo4g120010
Brassica oleracea
Bo4g120010
I
0.729
Pm004718
Prunus mume
Pm004718
I
0.729
Bo8g083600
Brassica oleracea
Bo8g083600
I
0.729
Ciclev10009338m.g
Citrus clementina
Ciclev10009338m.g
I
0.729
PRUPE_ppa012927mg
Prunus persica
PRUPE_ppa012927mg
I
0.729
Aquca_006_00074
Aquilegia coerulea
Aquca_006_00074
I
0.729
Ciclev10002410m.g
Citrus clementina
Ciclev10002410m.g
I
0.729
evm.TU.supercontig_26.316
Carica papaya
evm.TU.supercontig_26.316
I
0.729
cassava33721.m1
Manihot esculenta
cassava33721.m1
I
0.729
Gorai.002G223100
Gossypium raimondii
Gorai.002G223100
I
0.729
Bra014822
Brassica rapa
Bra014822
I
0.729
PGSC0003DMG400003709
Solanum tuberosum
PGSC0003DMG400003709
I
0.729
gene26118-v1.0-hybrid
Fragaria vesca
gene26118-v1.0-hybrid
I
0.714
OPUNC06G24880
Oryza punctata
OPUNC06G24880
I
0.708
Sb09g020770
Sorghum bicolor
Sb09g020770
I
0.708
SapurV1A.0829s0180
Salix purpurea
SapurV1A.0829s0180
I
0.708
orange1.1g040096m.g
Citrus sinensis
orange1.1g040096m.g
I
0.708
gene11267-v1.0-hybrid
Fragaria vesca
gene11267-v1.0-hybrid
I
0.708
gene11268-v1.0-hybrid
Fragaria vesca
gene11268-v1.0-hybrid
I
0.708
Ciclev10002471m.g
Citrus clementina
Ciclev10002471m.g
I
0.708
TCM_034148
Theobroma cacao
TCM_034148
I
0.708
Solyc06g059970.2
Solanum lycopersicum
Solyc06g059970.2
I
0.708
OB05G24910
Oryza brachyantha
OB05G24910
I
0.708
mgf000046m
Mimulus guttatus
mgf000046m
I
0.702