BRADI3G51140 (Brachypodium distachyon)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 BRADI3G51140 T326733_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G51140.1 Sox 34 103

Links

Other Sox family TFs
Other Brachypodium distachyon TFs

207 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.737
OS02G0670400 Oryza sativa OS02G0670400 N 0.737
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.737
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.737
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.737
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.737
OBART02G27340 Oryza barthii OBART02G27340 N 0.737
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.737
OB02G34710 Oryza brachyantha OB02G34710 N 0.737
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.724
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.724
Si018635m.g Setaria italica Si018635m.g N 0.722
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.699
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.699
Sb04g032180 Sorghum bicolor Sb04g032180 N 0.691
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.676
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.676
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.676
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.676
F775_30706 Aegilops tauschii F775_30706 I 0.676
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.660
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.632
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.621
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.597
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.544
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.539
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.513
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.513
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.511
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.511
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.508
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.506
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.505
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.505
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.505
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.505
OLONG_000335 Oryza longistaminata OLONG_000335 N 0.501
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.494
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.494
Bo5g030580 Brassica oleracea Bo5g030580 I 0.494
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.494
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.494
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.494
Cla009093 Citrullus lanatus Cla009093 I 0.494
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.494
30170.m014386 Ricinus communis 30170.m014386 I 0.494
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.494
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.494
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.494
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.494
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.494
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.494
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.493
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.492
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.491
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.490
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.490
MDP0000275042 Malus domestica MDP0000275042 I 0.490
TCM_034406 Theobroma cacao TCM_034406 I 0.490
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.490
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.490
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.490
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.490
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.488
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.485
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.484
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.484
MDP0000757111 Malus domestica MDP0000757111 I 0.484
MDP0000362980 Malus domestica MDP0000362980 I 0.484
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.484
Pm018913 Prunus mume Pm018913 I 0.484
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.484
29669.m000844 Ricinus communis 29669.m000844 I 0.483
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.482
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.480
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.480
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.479
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.479
TCM_000068 Theobroma cacao TCM_000068 I 0.477
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.474
Cla018386 Citrullus lanatus Cla018386 I 0.474
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.473
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.473
Bo7g061420 Brassica oleracea Bo7g061420 I 0.473
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.473
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.473
Bo8g070350 Brassica oleracea Bo8g070350 I 0.473
TCM_042534 Theobroma cacao TCM_042534 I 0.471
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.468
TCM_021706 Theobroma cacao TCM_021706 I 0.468
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.468
F775_27510 Aegilops tauschii F775_27510 I 0.468
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.468
OB06G35870 Oryza brachyantha OB06G35870 I 0.468
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.468
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.468
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.468
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.468
Bra025838 Brassica rapa Bra025838 I 0.467
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.466
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.466
Pm026798 Prunus mume Pm026798 I 0.465
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.465
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.465
HMGB3 Arabidopsis thaliana AT1G20696 I 0.465
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.465
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.465
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.465
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.464
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.464
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.464
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.464
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.461
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.461
OBART06G28090 Oryza barthii OBART06G28090 I 0.461
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.461
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.461
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.461
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.461
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.461
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.461
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.461
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.461
Si007288m.g Setaria italica Si007288m.g I 0.461
Si031512m.g Setaria italica Si031512m.g I 0.461
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.461
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.461
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.461
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.461
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.461
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.461
OS06G0728000 Oryza sativa OS06G0728000 I 0.461
PK11149.1 Cannabis sativa PK11149.1 I 0.457
mgf009330m Mimulus guttatus mgf009330m I 0.456
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.454
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.453
mgf014518m Mimulus guttatus mgf014518m I 0.452
MDP0000607529 Malus domestica MDP0000607529 I 0.452
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.451
Pm002934 Prunus mume Pm002934 I 0.451
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.451
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.451
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.451
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.451
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.448
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.448
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.448
Ca_09896 Cicer arietinum Ca_09896 I 0.448
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.444
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.442
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.441
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.441
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.441
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.441
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.441
Cla023817 Citrullus lanatus Cla023817 I 0.441
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.441
Ca_10725 Cicer arietinum Ca_10725 I 0.441
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.440
mgf006113m Mimulus guttatus mgf006113m I 0.440
mgf008076m Mimulus guttatus mgf008076m I 0.440
mgf016608m Mimulus guttatus mgf016608m I 0.440
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.439
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.437
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.437
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.436
GRMZM2G144398 Zea mays GRMZM2G144398 N 0.434
Ca_19340 Cicer arietinum Ca_19340 I 0.434
PK29786.1 Cannabis sativa PK29786.1 I 0.434
mgf016363m Mimulus guttatus mgf016363m I 0.434
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.434
AC186524.3_FG005 Zea mays AC186524.3_FG005 N 0.433
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.433
mgf000913m Mimulus guttatus mgf000913m I 0.433
OB09G25530 Oryza brachyantha OB09G25530 I 0.432
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.432
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.432
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.431
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.431
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.428
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.425
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.425
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.425
OS09G0551600 Oryza sativa OS09G0551600 I 0.425
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.425
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.425
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.422
HMGB2 Arabidopsis thaliana AT1G20693 I 0.422
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.422
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.422
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.422
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.422
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.421
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.420
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.420
Pavir.Ga01019 Panicum virgatum Pavir.Ga01019 N 0.419
Pavir.Gb00881 Panicum virgatum Pavir.Gb00881 N 0.419
PK14705.1 Cannabis sativa PK14705.1 I 0.419
SNAPOd2T00000370001 Oikopleura dioica SNAPOd2T00000370001 N 0.418
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.418
GRMZM2G145968 Zea mays GRMZM2G145968 N 0.418
Bo7g014280 Brassica oleracea Bo7g014280 I 0.418
Bra037266 Brassica rapa Bra037266 I 0.418
29701.m000600 Ricinus communis 29701.m000600 I 0.417
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.415
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.415
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.415