CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
ORGLA08G0137200
(
Oryza glaberrima
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
ORGLA08G0137200
T344192_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.826
0.372
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ORGLA08G0137200.1
TCP
88
224
PFRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAIDRLTLPDSADAAAAPAFAAAPPPADQHSSAMAAAAASAAKEKGEASSSSTTNASSARARNRGHDGSLPVAPMDERGRRG
Links
Other
TCP
family TFs
Other
Oryza glaberrima
TFs
82 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ONIVA08G16720
Oryza nivara
ONIVA08G16720
I
0.978
OBART08G15630
Oryza barthii
OBART08G15630
N
0.976
OGLUM08G16380
Oryza glumaepatula
OGLUM08G16380
I
0.969
OS08G0432300
Oryza sativa
OS08G0432300
I
0.967
ORUFI08G17540
Oryza rufipogon
ORUFI08G17540
I
0.967
BGIOSGA028717
Oryza indica
BGIOSGA028717
I
0.967
OMERI08G12900
Oryza meridionalis
OMERI08G12900
I
0.965
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
0.951
LPERR08G12880
Leersia perrieri
LPERR08G12880
I
0.940
BRADI3G36590
Brachypodium distachyon
BRADI3G36590
N
0.939
Si033183m.g
Setaria italica
Si033183m.g
I
0.938
Pavir.Bb02154
Panicum virgatum
Pavir.Bb02154
I
0.936
Pavir.Ba01820
Panicum virgatum
Pavir.Ba01820
I
0.931
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
0.931
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.929
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.926
OBART09G10040
Oryza barthii
OBART09G10040
I
0.924
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.924
OS09G0410500
Oryza sativa
OS09G0410500
I
0.924
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.924
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.924
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.924
F775_01923
Aegilops tauschii
F775_01923
I
0.924
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.921
MLOC_58142
Hordeum vulgare
MLOC_58142
I
0.920
Traes_5BL_19F383CC71
Triticum aestivum
Traes_5BL_19F383CC71
I
0.919
Si015230m.g
Setaria italica
Si015230m.g
I
0.918
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.917
Traes_5DL_46A3B0DAB1
Triticum aestivum
Traes_5DL_46A3B0DAB1
I
0.916
MLOC_4614
Hordeum vulgare
MLOC_4614
I
0.916
TRIUR3_20728
Triticum urartu
TRIUR3_20728
I
0.913
BRADI4G29980
Brachypodium distachyon
BRADI4G29980
I
0.913
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.908
GRMZM2G055024
Zea mays
GRMZM2G055024
I
0.907
Sb07g021140
Sorghum bicolor
Sb07g021140
I
0.906
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.906
GRMZM2G110242
Zea mays
GRMZM2G110242
I
0.903
Pavir.Fa00870
Panicum virgatum
Pavir.Fa00870
I
0.899
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
0.897
GRMZM2G031905
Zea mays
GRMZM2G031905
I
0.872
SapurV1A.1895s0010
Salix purpurea
SapurV1A.1895s0010
I
0.870
SapurV1A.1895s0020
Salix purpurea
SapurV1A.1895s0020
I
0.870
SapurV1A.0301s0010
Salix purpurea
SapurV1A.0301s0010
I
0.867
GRMZM2G062711
Zea mays
GRMZM2G062711
I
0.865
30174.m008721
Ricinus communis
30174.m008721
I
0.863
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.860
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.858
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.856
Lus10032465.g
Linum usitatissimum
Lus10032465.g
N
0.854
TCM_012252
Theobroma cacao
TCM_012252
I
0.852
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.852
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.851
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.848
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.837
BRADI1G11060
Brachypodium distachyon
BRADI1G11060
I
0.837
OMERI03G27910
Oryza meridionalis
OMERI03G27910
I
0.837
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.833
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.832
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
0.832
ORGLA03G0289500
Oryza glaberrima
ORGLA03G0289500
I
0.831
OBART03G31290
Oryza barthii
OBART03G31290
I
0.831
OPUNC03G28490
Oryza punctata
OPUNC03G28490
I
0.829
PGSC0003DMG400005705
Solanum tuberosum
PGSC0003DMG400005705
I
0.827
MDP0000224810
Malus domestica
MDP0000224810
N
0.827
Pavir.Ia00838
Panicum virgatum
Pavir.Ia00838
I
0.826
TB1
Oryza sativa
OS03G0706500
D
0.826
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.826
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.826
GSMUA_Achr2G21050_001
Musa acuminata
GSMUA_Achr2G21050_001
I
0.826
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.826
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.826
PRUPE_ppa027156mg
Prunus persica
PRUPE_ppa027156mg
I
0.825
30167.m000856
Ricinus communis
30167.m000856
I
0.824
mgf026636m
Mimulus guttatus
mgf026636m
I
0.823
AC233950.1_FG002
Zea mays
AC233950.1_FG002
I
0.823
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
0.823
evm.TU.supercontig_179.29
Carica papaya
evm.TU.supercontig_179.29
I
0.823
Ciclev10033382m.g
Citrus clementina
Ciclev10033382m.g
I
0.822
orange1.1g039323m.g
Citrus sinensis
orange1.1g039323m.g
I
0.822
Gorai.001G200400
Gossypium raimondii
Gorai.001G200400
I
0.822
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.822
Pm030202
Prunus mume
Pm030202
I
0.822