CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MLOC_58142
(
Hordeum vulgare
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
MLOC_58142
T344022_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.845
0.459
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MLOC_58142.1
TCP
64
186
PFRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDLLGFDKASKTVDWLLTQSKPAIDRLANAAQGSAVPAAAGPSTKEGATSSSTGCFEDAREEEHDVRDLMKSIGGEGELDWFMSEAAAI
MLOC_58142.2
TCP
1
106
MRLSVGVARDFFALQDLLGFDKASKTVDWLLTQSKPAIDRLANAAQGSAVPAAAGPSTKEGATSSSTGCFEDAREEEHDVRDLMKSIGGEGELDWFMSEAAAIDIE
Links
Other
TCP
family TFs
Other
Hordeum vulgare
TFs
111 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Traes_2DS_4C8E5F416
Triticum aestivum
Traes_2DS_4C8E5F416
N
0.963
F775_01923
Aegilops tauschii
F775_01923
I
0.959
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
0.949
OBART09G10040
Oryza barthii
OBART09G10040
I
0.947
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.947
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.947
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.947
OS09G0410500
Oryza sativa
OS09G0410500
I
0.947
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.947
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.945
Si015230m.g
Setaria italica
Si015230m.g
I
0.944
Pavir.Bb02154
Panicum virgatum
Pavir.Bb02154
I
0.944
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.943
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.943
Sb07g021140
Sorghum bicolor
Sb07g021140
I
0.942
Si033183m.g
Setaria italica
Si033183m.g
I
0.942
BRADI3G36590
Brachypodium distachyon
BRADI3G36590
N
0.942
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
0.941
GRMZM2G110242
Zea mays
GRMZM2G110242
I
0.941
Traes_5BL_19F383CC71
Triticum aestivum
Traes_5BL_19F383CC71
I
0.940
BRADI4G29980
Brachypodium distachyon
BRADI4G29980
I
0.939
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.939
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.937
Traes_2BS_03909B330
Triticum aestivum
Traes_2BS_03909B330
N
0.937
Pavir.Ba01820
Panicum virgatum
Pavir.Ba01820
I
0.937
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
0.935
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.935
Traes_5DL_46A3B0DAB1
Triticum aestivum
Traes_5DL_46A3B0DAB1
I
0.934
GRMZM2G055024
Zea mays
GRMZM2G055024
I
0.932
AC234521.1_FG006
Zea mays
AC234521.1_FG006
N
0.931
TRIUR3_20728
Triticum urartu
TRIUR3_20728
I
0.931
MLOC_4614
Hordeum vulgare
MLOC_4614
I
0.930
LPERR08G12880
Leersia perrieri
LPERR08G12880
I
0.930
GRMZM2G170232
Zea mays
GRMZM2G170232
N
0.929
GRMZM2G359599
Zea mays
GRMZM2G359599
N
0.929
OMERI08G12900
Oryza meridionalis
OMERI08G12900
I
0.923
ORGLA08G0137200
Oryza glaberrima
ORGLA08G0137200
I
0.920
Pavir.Fa00870
Panicum virgatum
Pavir.Fa00870
I
0.917
ONIVA08G16720
Oryza nivara
ONIVA08G16720
I
0.917
GRMZM2G135461
Zea mays
GRMZM2G135461
N
0.916
OGLUM08G16380
Oryza glumaepatula
OGLUM08G16380
I
0.912
BGIOSGA028717
Oryza indica
BGIOSGA028717
I
0.907
OS08G0432300
Oryza sativa
OS08G0432300
I
0.907
ORUFI08G17540
Oryza rufipogon
ORUFI08G17540
I
0.907
OBART08G15630
Oryza barthii
OBART08G15630
N
0.892
GRMZM2G088440
Zea mays
GRMZM2G088440
N
0.892
GRMZM2G031905
Zea mays
GRMZM2G031905
I
0.887
GRMZM2G062711
Zea mays
GRMZM2G062711
I
0.881
PGSC0003DMG400005705
Solanum tuberosum
PGSC0003DMG400005705
I
0.880
GRMZM2G414114
Zea mays
GRMZM2G414114
N
0.860
30174.m008721
Ricinus communis
30174.m008721
I
0.859
Pm015499
Prunus mume
Pm015499
I
0.857
PRUPE_ppa027156mg
Prunus persica
PRUPE_ppa027156mg
I
0.857
OB03G38320
Oryza brachyantha
OB03G38320
I
0.855
30167.m000856
Ricinus communis
30167.m000856
I
0.851
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.850
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.849
GRMZM2G458087
Zea mays
GRMZM2G458087
N
0.849
PDK_20s1689851g001
Phoenix dactylifera
PDK_20s1689851g001
I
0.847
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.845
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.845
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.845
TB1
Oryza sativa
OS03G0706500
D
0.845
OBART03G31290
Oryza barthii
OBART03G31290
I
0.843
GRMZM2G424261
Zea mays
GRMZM2G424261
N
0.843
ORGLA03G0289500
Oryza glaberrima
ORGLA03G0289500
I
0.843
Solyc06g069240.1
Solanum lycopersicum
Solyc06g069240.1
N
0.842
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
0.842
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.842
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.841
OMERI03G27910
Oryza meridionalis
OMERI03G27910
I
0.840
SapurV1A.1895s0020
Salix purpurea
SapurV1A.1895s0020
I
0.840
SapurV1A.1895s0010
Salix purpurea
SapurV1A.1895s0010
I
0.840
SapurV1A.0301s0010
Salix purpurea
SapurV1A.0301s0010
I
0.840
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.837
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.837
evm.TU.supercontig_179.29
Carica papaya
evm.TU.supercontig_179.29
I
0.836
GLYMA06G23410
Glycine max
GLYMA06G23410
N
0.836
chr4.LjB15O07.110.nc
Lotus japonicus
chr4.LjB15O07.110.nc
I
0.836
Traes_4BS_DC076554D
Triticum aestivum
Traes_4BS_DC076554D
I
0.835
MLOC_70116
Hordeum vulgare
MLOC_70116
I
0.835
Thhalv10019499m.g
Eutrema salsugineum
Thhalv10019499m.g
I
0.835
Traes_4DS_59A46B69A
Triticum aestivum
Traes_4DS_59A46B69A
I
0.835
Traes_4AL_75D069945
Triticum aestivum
Traes_4AL_75D069945
I
0.835
TRIUR3_31795
Triticum urartu
TRIUR3_31795
I
0.835
MDP0000224810
Malus domestica
MDP0000224810
N
0.834
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.833
GSMUA_Achr2G21050_001
Musa acuminata
GSMUA_Achr2G21050_001
I
0.833
Pm030202
Prunus mume
Pm030202
I
0.833
BRADI1G11060
Brachypodium distachyon
BRADI1G11060
I
0.832
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.831
mgf022233m
Mimulus guttatus
mgf022233m
I
0.830
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
0.828
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.828
Cla018797
Citrullus lanatus
Cla018797
N
0.828
Pm029002
Prunus mume
Pm029002
I
0.826
TCM_019518
Theobroma cacao
TCM_019518
I
0.826
Si038692m.g
Setaria italica
Si038692m.g
I
0.826
OPUNC03G28490
Oryza punctata
OPUNC03G28490
I
0.826
AC233950.1_FG002
Zea mays
AC233950.1_FG002
I
0.826
Carubv10013748m.g
Capsella rubella
Carubv10013748m.g
I
0.826
Cagra.1681s0023
Capsella grandiflora
Cagra.1681s0023
I
0.826
PRUPE_ppa016240mg
Prunus persica
PRUPE_ppa016240mg
I
0.826
Gorai.001G200400
Gossypium raimondii
Gorai.001G200400
I
0.825
Pavir.Ia00838
Panicum virgatum
Pavir.Ia00838
I
0.824
Aquca_002_01093
Aquilegia coerulea
Aquca_002_01093
I
0.824
Bostr.19424s0807
Boechera stricta
Bostr.19424s0807
I
0.823
PGSC0003DMG400004054
Solanum tuberosum
PGSC0003DMG400004054
N
0.822
Eucgr.K02654
Eucalyptus grandis
Eucgr.K02654
I
0.822
Bo2g055640
Brassica oleracea
Bo2g055640
I
0.822