Gorai.001G200400 (Gossypium raimondii)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Gorai.001G200400 T344850_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.898 0.420
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.885 0.446
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.881 0.414
TB1
M01312_2.00 		Oryza sativa
GGSCCCCCYM
KRGGGGGSCC		 PBM
Lambert et al.(2019)
pTH8740 		0.828 0.427
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G200400.1 TCP 99 256

Links

Other TCP family TFs
Other Gossypium raimondii TFs

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_019518 Theobroma cacao TCM_019518 I 0.954
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.918
Bra004212 Brassica rapa Bra004212 I 0.911
Bo6g099040 Brassica oleracea Bo6g099040 I 0.905
Bo6g103670 Brassica oleracea Bo6g103670 I 0.900
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.900
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.899
TCP1 Arabidopsis thaliana AT1G67260 D 0.898
Bra004097 Brassica rapa Bra004097 I 0.898
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.898
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.897
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.893
Cla007227 Citrullus lanatus Cla007227 I 0.892
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.892
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.891
Bra034010 Brassica rapa Bra034010 I 0.890
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.890
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.890
30167.m000856 Ricinus communis 30167.m000856 I 0.889
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.889
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.889
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.886
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.886
mgf019480m Mimulus guttatus mgf019480m I 0.886
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.886
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.885
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.885
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.885
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.885
PK19717.1 Cannabis sativa PK19717.1 D 0.885
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.885
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.884
Cla016709 Citrullus lanatus Cla016709 I 0.884
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.883
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.883
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.882
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.882
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.881
Bo2g055640 Brassica oleracea Bo2g055640 I 0.881
PK12240.1 Cannabis sativa PK12240.1 D 0.881
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.880
29738.m001041 Ricinus communis 29738.m001041 I 0.880
MDP0000173048 Malus domestica MDP0000173048 I 0.880
30174.m008721 Ricinus communis 30174.m008721 I 0.879
BRC2 Arabidopsis thaliana AT1G68800 I 0.879
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.878
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.878
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.877
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.877
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.877
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.877
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.876
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.873
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.871
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.871
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.870
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.870
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.870
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.869
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.869
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.868
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.868
Bo2g061250 Brassica oleracea Bo2g061250 I 0.867
Bra038350 Brassica rapa Bra038350 I 0.867
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.867
Pm029002 Prunus mume Pm029002 I 0.867
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.867
Cla002355 Citrullus lanatus Cla002355 I 0.867
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.866
MDP0000272980 Malus domestica MDP0000272980 I 0.866
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.865
TCM_011874 Theobroma cacao TCM_011874 I 0.864
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.864
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.863
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.860
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.856
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.855
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.854
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.854
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.853
Pm015499 Prunus mume Pm015499 I 0.852
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.851
F775_01923 Aegilops tauschii F775_01923 I 0.850
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.850
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.849
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.849
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.847
mgf022233m Mimulus guttatus mgf022233m I 0.847
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.846
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.846
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.845
Si015230m.g Setaria italica Si015230m.g I 0.845
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.845
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.845
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.843
TCM_012252 Theobroma cacao TCM_012252 I 0.842
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.841
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.841
OMERI08G12900 Oryza meridionalis OMERI08G12900 I 0.841
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.839
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.838
mgf026636m Mimulus guttatus mgf026636m I 0.838
Pm030202 Prunus mume Pm030202 I 0.838
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.837
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I 0.837
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.837
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.837
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.836
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.835
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.835
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.835
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.835
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.833
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.832
Cla019282 Citrullus lanatus Cla019282 N 0.832
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.829
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.829
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.829
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.829
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I 0.829
Si033183m.g Setaria italica Si033183m.g I 0.828
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.828
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I 0.828
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.828
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.828
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.828
OBART03G31290 Oryza barthii OBART03G31290 I 0.828
TB1 Oryza sativa OS03G0706500 D 0.828
OMERI03G27910 Oryza meridionalis OMERI03G27910 I 0.828
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.828
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.825
Cucsa.198860 Cucumis sativus Cucsa.198860 N 0.825
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.825
mgf024687m Mimulus guttatus mgf024687m I 0.824
Si038692m.g Setaria italica Si038692m.g I 0.824
Bra037579 Brassica rapa Bra037579 I 0.823
ONIVA08G16720 Oryza nivara ONIVA08G16720 I 0.822
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I 0.822