MDP0000173048 (Malus domestica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 MDP0000173048 T344916_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.929 0.470
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.884 0.423
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.870 0.409
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000173048 TCP 160 308

Links

Other TCP family TFs
Other Malus domestica TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.953
Pm029002 Prunus mume Pm029002 I 0.953
MDP0000272980 Malus domestica MDP0000272980 I 0.939
29738.m001041 Ricinus communis 29738.m001041 I 0.936
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.935
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.934
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.934
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.934
BRC2 Arabidopsis thaliana AT1G68800 I 0.933
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.931
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.931
TCM_011874 Theobroma cacao TCM_011874 I 0.931
Cla002355 Citrullus lanatus Cla002355 I 0.931
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.930
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.929
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.929
PK12240.1 Cannabis sativa PK12240.1 D 0.929
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.927
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.927
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.926
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.925
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.920
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.919
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.919
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.919
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.919
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.911
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.910
Bra038350 Brassica rapa Bra038350 I 0.909
Bo2g061250 Brassica oleracea Bo2g061250 I 0.909
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.906
Cla016709 Citrullus lanatus Cla016709 I 0.904
30167.m000856 Ricinus communis 30167.m000856 I 0.900
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.900
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.900
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.899
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.898
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.897
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.897
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.897
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.896
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.896
Cla007227 Citrullus lanatus Cla007227 I 0.895
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.894
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.892
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.892
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.889
mgf019480m Mimulus guttatus mgf019480m I 0.888
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.888
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.887
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.887
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.885
PK19717.1 Cannabis sativa PK19717.1 D 0.884
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.883
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.883
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.881
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.881
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.880
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.880
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.880
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.880
Bo6g103670 Brassica oleracea Bo6g103670 I 0.879
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.877
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.877
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.876
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.876
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.874
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.872
mgf026636m Mimulus guttatus mgf026636m I 0.871
TCM_019518 Theobroma cacao TCM_019518 I 0.871
Bra004212 Brassica rapa Bra004212 I 0.871
TCP1 Arabidopsis thaliana AT1G67260 D 0.870
Bo6g099040 Brassica oleracea Bo6g099040 I 0.869
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.868
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.866
mgf022233m Mimulus guttatus mgf022233m I 0.865
30174.m008721 Ricinus communis 30174.m008721 I 0.864
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.863
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.862
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.862
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.862
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.861
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.861
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.859
TCM_012252 Theobroma cacao TCM_012252 I 0.856
Bra004097 Brassica rapa Bra004097 I 0.851
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.849
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.847
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.847
Pm015499 Prunus mume Pm015499 I 0.847
Pm030202 Prunus mume Pm030202 I 0.846
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.846
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.843
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.843
Bra034010 Brassica rapa Bra034010 I 0.842
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.841
MDP0000224810 Malus domestica MDP0000224810 N 0.839
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.838
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.836
mgf024687m Mimulus guttatus mgf024687m I 0.836
Bo2g055640 Brassica oleracea Bo2g055640 I 0.836
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.835
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.831
Cla019282 Citrullus lanatus Cla019282 N 0.830
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I 0.824
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.823
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.823
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.822