Carubv10020555m.g (Capsella rubella)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Carubv10020555m.g T344765_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH

DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.931 0.480
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS

SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.881 0.382
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC

GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.870 0.382
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM

KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.830 0.368
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020555m TCP 86 237

Links

Other TCP family TFs
Other Capsella rubella TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.969
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.949
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.947
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.943
Bra004097 Brassica rapa Bra004097 I 0.940
TCP1 Arabidopsis thaliana AT1G67260 D 0.931
Bo6g103670 Brassica oleracea Bo6g103670 I 0.922
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.921
Bra034010 Brassica rapa Bra034010 I 0.921
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.918
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.912
Bo2g055640 Brassica oleracea Bo2g055640 I 0.912
Bo6g099040 Brassica oleracea Bo6g099040 I 0.909
Bra004212 Brassica rapa Bra004212 I 0.909
Pm015499 Prunus mume Pm015499 I 0.909
Cla016709 Citrullus lanatus Cla016709 I 0.897
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.895
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.895
30167.m000856 Ricinus communis 30167.m000856 I 0.894
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.884
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.883
TCM_019518 Theobroma cacao TCM_019518 I 0.881
PK12240.1 Cannabis sativa PK12240.1 D 0.881
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.877
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.874
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.872
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.872
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.872
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.872
BRC2 Arabidopsis thaliana AT1G68800 I 0.870
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.870
PK19717.1 Cannabis sativa PK19717.1 D 0.870
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.867
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.866
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.864
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.863
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.863
mgf019480m Mimulus guttatus mgf019480m I 0.863
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.863
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.862
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.862
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.862
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.862
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.862
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.862
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.861
Bra038350 Brassica rapa Bra038350 I 0.861
Bo2g061250 Brassica oleracea Bo2g061250 I 0.861
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.861
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.861
mgf022233m Mimulus guttatus mgf022233m I 0.861
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.860
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.860
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.860
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.860
29738.m001041 Ricinus communis 29738.m001041 I 0.859
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.858
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.858
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.855
Cla007227 Citrullus lanatus Cla007227 I 0.855
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.854
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.854
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.854
MDP0000272980 Malus domestica MDP0000272980 I 0.853
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.853
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.852
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.851
Pm030202 Prunus mume Pm030202 I 0.851
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.851
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.851
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.850
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.850
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.849
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.848
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.848
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.848
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.848
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.847
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.847
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.846
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.846
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.846
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.845
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.842
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.841
MDP0000173048 Malus domestica MDP0000173048 I 0.841
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.841
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.841
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.840
Cla002355 Citrullus lanatus Cla002355 I 0.840
TCM_012252 Theobroma cacao TCM_012252 I 0.840
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.839
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.838
Pm029002 Prunus mume Pm029002 I 0.838
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.838
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.835
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.835
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.834
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.833
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.833
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.833
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.833
mgf024687m Mimulus guttatus mgf024687m I 0.832
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.832
30174.m008721 Ricinus communis 30174.m008721 I 0.831
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.831
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.830
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.830
TB1 Oryza sativa OS03G0706500 D 0.830
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.830
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.830
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.830
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.830
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.828
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I 0.828
Pavir.Ia00838 Panicum virgatum Pavir.Ia00838 I 0.827
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.827
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.826
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.826
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.825
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.825
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.824
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.824
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.824
mgf026636m Mimulus guttatus mgf026636m I 0.822