Lus10003078.g (Linum usitatissimum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Lus10003078.g T344887_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.832 0.326
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.831 0.340
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10003078 TCP 102 244

Links

Other TCP family TFs
Other Linum usitatissimum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.957
mgf019480m Mimulus guttatus mgf019480m I 0.858
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.857
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.854
mgf022233m Mimulus guttatus mgf022233m I 0.852
Cla016709 Citrullus lanatus Cla016709 I 0.851
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.851
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.848
TCM_019518 Theobroma cacao TCM_019518 I 0.845
BRC2 Arabidopsis thaliana AT1G68800 I 0.843
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.841
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.838
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.838
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.837
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.837
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.837
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.836
Bra034010 Brassica rapa Bra034010 I 0.836
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.836
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.836
29738.m001041 Ricinus communis 29738.m001041 I 0.834
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.834
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.834
PK12240.1 Cannabis sativa PK12240.1 D 0.832
Bo6g099040 Brassica oleracea Bo6g099040 I 0.832
Bra004097 Brassica rapa Bra004097 I 0.831
TCP1 Arabidopsis thaliana AT1G67260 D 0.831
Bo6g103670 Brassica oleracea Bo6g103670 I 0.831
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.830
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.830
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.829
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.829
30167.m000856 Ricinus communis 30167.m000856 I 0.829
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.829
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.829
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.828
Bra004212 Brassica rapa Bra004212 I 0.827
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.826
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.826
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.825
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.825
Bo2g055640 Brassica oleracea Bo2g055640 I 0.824
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.824
TCM_011874 Theobroma cacao TCM_011874 I 0.824
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.824
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.823
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I 0.823
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.822
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.822