Cagra.1125s0016 (Capsella grandiflora)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cagra.1125s0016 T344727_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.932 0.559
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.888 0.375
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.880 0.421
TB1
M01312_2.00 		Oryza sativa
GGSCCCCCYM
KRGGGGGSCC		 PBM
Lambert et al.(2019)
pTH8740 		0.824 0.368
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1125s0016.1.p TCP 86 240

Links

Other TCP family TFs
Other Capsella grandiflora TFs

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.969
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.959
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.957
Bra004097 Brassica rapa Bra004097 I 0.955
Bo6g103670 Brassica oleracea Bo6g103670 I 0.943
TCP1 Arabidopsis thaliana AT1G67260 D 0.932
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.930
Bra004212 Brassica rapa Bra004212 I 0.924
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.922
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.920
Bra034010 Brassica rapa Bra034010 I 0.920
Bo6g099040 Brassica oleracea Bo6g099040 I 0.918
Bo2g055640 Brassica oleracea Bo2g055640 I 0.914
30167.m000856 Ricinus communis 30167.m000856 I 0.906
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.904
Pm015499 Prunus mume Pm015499 I 0.903
Cla016709 Citrullus lanatus Cla016709 I 0.900
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.894
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.893
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.892
PK12240.1 Cannabis sativa PK12240.1 D 0.888
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.885
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.881
PK19717.1 Cannabis sativa PK19717.1 D 0.880
BRC2 Arabidopsis thaliana AT1G68800 I 0.878
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.877
TCM_019518 Theobroma cacao TCM_019518 I 0.877
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.876
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.875
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.874
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.873
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.873
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.873
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.872
mgf022233m Mimulus guttatus mgf022233m I 0.870
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.870
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.869
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.868
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.867
Pm030202 Prunus mume Pm030202 I 0.867
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.867
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.867
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.865
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.865
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.864
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.864
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.864
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.863
Cla007227 Citrullus lanatus Cla007227 I 0.862
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.862
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.862
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.861
mgf019480m Mimulus guttatus mgf019480m I 0.861
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.860
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.860
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.860
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.860
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.860
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.859
Bo2g061250 Brassica oleracea Bo2g061250 I 0.858
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.858
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.858
Bra038350 Brassica rapa Bra038350 I 0.858
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.856
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.856
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.856
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.854
MDP0000272980 Malus domestica MDP0000272980 I 0.854
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.853
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.853
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.852
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.851
29738.m001041 Ricinus communis 29738.m001041 I 0.851
mgf026636m Mimulus guttatus mgf026636m I 0.849
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.849
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.848
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.844
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.844
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.843
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.843
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.843
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.843
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.843
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.842
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.842
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.841
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.841
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.840
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.839
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.839
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.838
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.838
Cla002355 Citrullus lanatus Cla002355 I 0.838
MDP0000173048 Malus domestica MDP0000173048 I 0.838
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.837
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.834
TCM_012252 Theobroma cacao TCM_012252 I 0.833
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.833
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.833
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.833
Pm029002 Prunus mume Pm029002 I 0.833
Si033183m.g Setaria italica Si033183m.g I 0.832
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.832
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.832
30174.m008721 Ricinus communis 30174.m008721 I 0.831
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.830
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.830
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.830
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.830
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.828
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.828
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.828
mgf024687m Mimulus guttatus mgf024687m I 0.828
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.828
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.826
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.826
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.824
TB1 Oryza sativa OS03G0706500 D 0.824
TCM_011874 Theobroma cacao TCM_011874 I 0.824
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.824
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.824
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.824
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.824
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.824
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.823
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.823
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.823
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.823
AC190734.2_FG003 Zea mays AC190734.2_FG003 I 0.822