Bo6g103670 (Brassica oleracea)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bo6g103670 T343749_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.947 0.641
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.903 0.379
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.881 0.418
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g103670.1 TCP 84 236

Links

Other TCP family TFs
Other Brassica oleracea TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra004212 Brassica rapa Bra004212 I 0.969
Bo6g099040 Brassica oleracea Bo6g099040 I 0.952
Bra004097 Brassica rapa Bra004097 I 0.949
TCP1 Arabidopsis thaliana AT1G67260 D 0.947
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.945
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.943
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.935
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.930
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.928
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.922
Bra034010 Brassica rapa Bra034010 I 0.922
Bo2g055640 Brassica oleracea Bo2g055640 I 0.918
Cla016709 Citrullus lanatus Cla016709 I 0.914
30167.m000856 Ricinus communis 30167.m000856 I 0.914
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.913
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.906
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.904
PK12240.1 Cannabis sativa PK12240.1 D 0.903
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.902
TCM_019518 Theobroma cacao TCM_019518 I 0.900
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.900
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.897
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.896
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.895
Pm015499 Prunus mume Pm015499 I 0.895
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.892
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.892
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.891
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.891
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.891
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.891
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.890
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.890
29738.m001041 Ricinus communis 29738.m001041 I 0.885
BRC2 Arabidopsis thaliana AT1G68800 I 0.885
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.884
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.884
mgf019480m Mimulus guttatus mgf019480m I 0.883
PK19717.1 Cannabis sativa PK19717.1 D 0.881
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.881
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.880
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.880
MDP0000173048 Malus domestica MDP0000173048 I 0.879
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.877
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.877
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.875
Cla007227 Citrullus lanatus Cla007227 I 0.875
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.874
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.874
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.873
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.871
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.870
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.869
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.869
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.868
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.868
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.868
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.868
TCM_011874 Theobroma cacao TCM_011874 I 0.867
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.866
MDP0000272980 Malus domestica MDP0000272980 I 0.864
mgf022233m Mimulus guttatus mgf022233m I 0.861
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.859
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.858
Pm029002 Prunus mume Pm029002 I 0.858
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.858
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.856
Cla002355 Citrullus lanatus Cla002355 I 0.851
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.850
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.849
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.849
Bra038350 Brassica rapa Bra038350 I 0.848
Bo2g061250 Brassica oleracea Bo2g061250 I 0.848
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.848
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.845
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.841
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.840
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.839
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.834
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.833
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.833
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.833
30174.m008721 Ricinus communis 30174.m008721 I 0.832
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.831
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.831
Pm030202 Prunus mume Pm030202 I 0.831
mgf026636m Mimulus guttatus mgf026636m I 0.831
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.831
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.830
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.828
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.825
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.824
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.822