Bra004097 (Brassica rapa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bra004097 T343766_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.919 0.550
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.918 0.369
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.864 0.396
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004097.1-P TCP 85 233

Links

Other TCP family TFs
Other Brassica rapa TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.955
Bo6g103670 Brassica oleracea Bo6g103670 I 0.949
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.943
Bo6g099040 Brassica oleracea Bo6g099040 I 0.941
Bra004212 Brassica rapa Bra004212 I 0.941
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.940
Bra034010 Brassica rapa Bra034010 I 0.938
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.933
Bo2g055640 Brassica oleracea Bo2g055640 I 0.931
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.928
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.923
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.921
TCP1 Arabidopsis thaliana AT1G67260 D 0.919
PK12240.1 Cannabis sativa PK12240.1 D 0.918
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.916
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.916
30167.m000856 Ricinus communis 30167.m000856 I 0.915
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.913
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.907
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.901
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.901
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.901
Cla016709 Citrullus lanatus Cla016709 I 0.900
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.900
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.899
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.899
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.899
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.898
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.897
TCM_019518 Theobroma cacao TCM_019518 I 0.896
BRC2 Arabidopsis thaliana AT1G68800 I 0.895
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.895
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.894
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.892
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.892
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.891
Pm015499 Prunus mume Pm015499 I 0.890
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.883
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.883
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.882
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.877
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.876
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.875
mgf019480m Mimulus guttatus mgf019480m I 0.875
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.874
Cla007227 Citrullus lanatus Cla007227 I 0.874
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.874
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.873
MDP0000272980 Malus domestica MDP0000272980 I 0.873
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.873
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.871
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.870
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.870
Cla002355 Citrullus lanatus Cla002355 I 0.868
29738.m001041 Ricinus communis 29738.m001041 I 0.867
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.866
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.865
PK19717.1 Cannabis sativa PK19717.1 D 0.864
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.859
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.857
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.857
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.856
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.855
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.853
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.852
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.852
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.852
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.852
MDP0000173048 Malus domestica MDP0000173048 I 0.851
mgf022233m Mimulus guttatus mgf022233m I 0.850
Pm029002 Prunus mume Pm029002 I 0.848
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.848
Pm030202 Prunus mume Pm030202 I 0.844
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.844
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.844
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.843
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.843
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.843
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.841
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.840
Bo2g061250 Brassica oleracea Bo2g061250 I 0.840
Bra038350 Brassica rapa Bra038350 I 0.840
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.840
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.838
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.838
TCM_011874 Theobroma cacao TCM_011874 I 0.838
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.838
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.837
mgf026636m Mimulus guttatus mgf026636m I 0.836
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.835
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.833
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.831
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.831
mgf024687m Mimulus guttatus mgf024687m I 0.831
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.829
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.829
LjSGA_018294.2 Lotus japonicus LjSGA_018294.2 I 0.828
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.827
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.826
TCM_012252 Theobroma cacao TCM_012252 I 0.826
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.826
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.826
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.826
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.826
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.822