MTR_1g103380 (Medicago truncatula)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 MTR_1g103380 T344034_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.929 0.467
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.857 0.460
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.834 0.409
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH43846 TCP 199 335

Links

Other TCP family TFs
Other Medicago truncatula TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.954
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.939
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.932
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.929
PK12240.1 Cannabis sativa PK12240.1 D 0.929
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.925
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.925
BRC2 Arabidopsis thaliana AT1G68800 I 0.922
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.918
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.917
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.917
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.917
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.917
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.917
30167.m000856 Ricinus communis 30167.m000856 I 0.915
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.914
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.913
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.912
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.911
MDP0000272980 Malus domestica MDP0000272980 I 0.911
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.910
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.909
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.906
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.905
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.905
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.905
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.901
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.900
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.900
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.899
MDP0000173048 Malus domestica MDP0000173048 I 0.897
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.896
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.895
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.895
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.895
Pm029002 Prunus mume Pm029002 I 0.895
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.894
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.892
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.891
Bra004097 Brassica rapa Bra004097 I 0.891
Cla016709 Citrullus lanatus Cla016709 I 0.887
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.885
Cla002355 Citrullus lanatus Cla002355 I 0.885
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.883
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.883
mgf019480m Mimulus guttatus mgf019480m I 0.883
Cla007227 Citrullus lanatus Cla007227 I 0.880
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.877
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.877
TCM_011874 Theobroma cacao TCM_011874 I 0.876
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.875
Bo6g103670 Brassica oleracea Bo6g103670 I 0.874
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.874
29738.m001041 Ricinus communis 29738.m001041 I 0.872
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.871
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.871
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.871
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.871
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.870
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.866
LjSGA_018294.2 Lotus japonicus LjSGA_018294.2 I 0.863
TCM_019518 Theobroma cacao TCM_019518 I 0.862
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.861
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.861
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.860
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.859
Bra038350 Brassica rapa Bra038350 I 0.859
Bo2g061250 Brassica oleracea Bo2g061250 I 0.859
Bra004212 Brassica rapa Bra004212 I 0.857
PK19717.1 Cannabis sativa PK19717.1 D 0.857
mgf026636m Mimulus guttatus mgf026636m I 0.853
mgf022233m Mimulus guttatus mgf022233m I 0.850
Pm015499 Prunus mume Pm015499 I 0.848
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.848
Bo6g099040 Brassica oleracea Bo6g099040 I 0.846
mgf024687m Mimulus guttatus mgf024687m I 0.843
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.841
TCM_012252 Theobroma cacao TCM_012252 I 0.840
Bra034010 Brassica rapa Bra034010 I 0.837
Bo2g055640 Brassica oleracea Bo2g055640 I 0.837
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.834
TCP1 Arabidopsis thaliana AT1G67260 D 0.834
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.833
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.830