MDP0000272980 (Malus domestica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 MDP0000272980 T344936_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.939 0.463
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.859 0.430
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.842 0.389
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000272980 TCP 166 314

Links

Other TCP family TFs
Other Malus domestica TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.952
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.944
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.941
BRC2 Arabidopsis thaliana AT1G68800 I 0.941
PK12240.1 Cannabis sativa PK12240.1 D 0.939
MDP0000173048 Malus domestica MDP0000173048 I 0.939
Pm029002 Prunus mume Pm029002 I 0.933
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.933
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.932
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.932
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.932
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.928
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.926
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.926
30167.m000856 Ricinus communis 30167.m000856 I 0.926
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.923
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.923
29738.m001041 Ricinus communis 29738.m001041 I 0.922
Cla002355 Citrullus lanatus Cla002355 I 0.922
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.920
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.920
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.918
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.915
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.915
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.915
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.913
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.912
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.911
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.911
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.910
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.910
TCM_011874 Theobroma cacao TCM_011874 I 0.909
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.908
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.907
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.907
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.907
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.905
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.900
Bo2g061250 Brassica oleracea Bo2g061250 I 0.900
Bra038350 Brassica rapa Bra038350 I 0.900
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.898
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.897
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.896
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.896
Cla007227 Citrullus lanatus Cla007227 I 0.895
mgf024687m Mimulus guttatus mgf024687m I 0.889
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.889
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.887
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.887
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.887
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.887
mgf026636m Mimulus guttatus mgf026636m I 0.887
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.886
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.886
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.885
Cla016709 Citrullus lanatus Cla016709 I 0.878
Pm015499 Prunus mume Pm015499 I 0.877
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.873
Bra004097 Brassica rapa Bra004097 I 0.873
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.870
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.869
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.869
TCM_019518 Theobroma cacao TCM_019518 I 0.868
mgf019480m Mimulus guttatus mgf019480m I 0.866
Pm030202 Prunus mume Pm030202 I 0.866
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.866
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.866
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.866
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.866
TCM_012252 Theobroma cacao TCM_012252 I 0.865
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.865
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.864
Bo6g103670 Brassica oleracea Bo6g103670 I 0.864
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.862
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.862
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.862
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.860
PK19717.1 Cannabis sativa PK19717.1 D 0.859
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.857
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.855
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.854
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.853
30174.m008721 Ricinus communis 30174.m008721 I 0.853
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.852
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.848
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.847
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.847
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.846
Bra004212 Brassica rapa Bra004212 I 0.846
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.845
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.845
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.843
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.842
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.842
TCP1 Arabidopsis thaliana AT1G67260 D 0.842
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.840
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.839
mgf022233m Mimulus guttatus mgf022233m I 0.839
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.838
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.838
Bo6g099040 Brassica oleracea Bo6g099040 I 0.838
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.837
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.837
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.837
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.837
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.834
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.834
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.834
MDP0000224810 Malus domestica MDP0000224810 N 0.834
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.833
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I 0.832
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.830
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.829
Bo2g055640 Brassica oleracea Bo2g055640 I 0.828
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.827
Bra034010 Brassica rapa Bra034010 I 0.822