29738.m001041 (Ricinus communis)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 29738.m001041 T344577_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.928 0.487
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.878 0.397
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.867 0.442
TB1
M01312_2.00 		Oryza sativa
GGSCCCCCYM
KRGGGGGSCC		 PBM
Lambert et al.(2019)
pTH8740 		0.823 0.449
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29738.m001041 TCP 124 281

Links

Other TCP family TFs
Other Ricinus communis TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.959
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.954
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.949
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.946
TCM_011874 Theobroma cacao TCM_011874 I 0.946
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.946
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.946
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.945
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.942
MDP0000173048 Malus domestica MDP0000173048 I 0.936
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.933
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.932
PK12240.1 Cannabis sativa PK12240.1 D 0.928
Cla002355 Citrullus lanatus Cla002355 I 0.926
Pm029002 Prunus mume Pm029002 I 0.926
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.926
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.922
MDP0000272980 Malus domestica MDP0000272980 I 0.922
Cla016709 Citrullus lanatus Cla016709 I 0.920
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.920
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.919
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.919
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.918
Bo2g061250 Brassica oleracea Bo2g061250 I 0.918
Bra038350 Brassica rapa Bra038350 I 0.918
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.917
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.914
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.911
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.911
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.911
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.910
BRC2 Arabidopsis thaliana AT1G68800 I 0.910
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.909
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.905
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.904
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.903
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.903
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.903
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.903
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.900
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.897
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.897
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.897
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.894
Cla007227 Citrullus lanatus Cla007227 I 0.893
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.892
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.891
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.889
Bra004212 Brassica rapa Bra004212 I 0.885
Bo6g103670 Brassica oleracea Bo6g103670 I 0.885
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.884
mgf019480m Mimulus guttatus mgf019480m I 0.882
TCM_019518 Theobroma cacao TCM_019518 I 0.882
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.881
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.880
30167.m000856 Ricinus communis 30167.m000856 I 0.880
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.880
TCP1 Arabidopsis thaliana AT1G67260 D 0.878
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.877
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.875
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.875
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.874
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.873
Bo6g099040 Brassica oleracea Bo6g099040 I 0.873
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.872
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.872
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.870
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.870
mgf026636m Mimulus guttatus mgf026636m I 0.870
PK19717.1 Cannabis sativa PK19717.1 D 0.867
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.867
Bra004097 Brassica rapa Bra004097 I 0.867
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.865
30174.m008721 Ricinus communis 30174.m008721 I 0.865
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.865
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.865
mgf022233m Mimulus guttatus mgf022233m I 0.863
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.861
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.859
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.858
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.858
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I 0.858
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.858
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.858
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.857
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.855
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.853
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.852
Pm015499 Prunus mume Pm015499 I 0.851
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.851
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.851
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.850
Pm030202 Prunus mume Pm030202 I 0.850
Bo2g055640 Brassica oleracea Bo2g055640 I 0.849
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.849
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.846
Bra034010 Brassica rapa Bra034010 I 0.845
Cla019282 Citrullus lanatus Cla019282 N 0.841
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.837
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.837
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.836
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.834
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.834
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.834
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.830
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.830
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.828
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.827
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.827
Cucsa.198860 Cucumis sativus Cucsa.198860 N 0.826
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.826
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I 0.826
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.825
MDP0000224810 Malus domestica MDP0000224810 N 0.825
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.823
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.823
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.823
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.823
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.823
TB1 Oryza sativa OS03G0706500 D 0.823
Pavir.Ia00838 Panicum virgatum Pavir.Ia00838 I 0.822