chr5.CM0357.550.nc (Lotus japonicus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 chr5.CM0357.550.nc T345124_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.918 0.434
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.872 0.441
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.824 0.385
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr5.CM0357.550.nc TCP 112 255

Links

Other TCP family TFs
Other Lotus japonicus TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.954
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.940
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.930
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.929
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.925
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.920
PK12240.1 Cannabis sativa PK12240.1 D 0.918
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.918
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.918
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.917
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.916
30167.m000856 Ricinus communis 30167.m000856 I 0.909
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.906
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.904
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.903
BRC2 Arabidopsis thaliana AT1G68800 I 0.903
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.902
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.900
Bra004097 Brassica rapa Bra004097 I 0.899
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.897
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.897
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.897
MDP0000272980 Malus domestica MDP0000272980 I 0.896
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.896
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.895
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.895
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.895
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.894
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.893
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.891
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.889
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.889
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.888
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.888
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.888
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.886
MDP0000173048 Malus domestica MDP0000173048 I 0.883
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.883
TCM_011874 Theobroma cacao TCM_011874 I 0.882
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.882
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.882
Cla007227 Citrullus lanatus Cla007227 I 0.879
mgf019480m Mimulus guttatus mgf019480m I 0.878
Cla016709 Citrullus lanatus Cla016709 I 0.878
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.877
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.876
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.875
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.875
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.873
PK19717.1 Cannabis sativa PK19717.1 D 0.872
29738.m001041 Ricinus communis 29738.m001041 I 0.870
Bo6g103670 Brassica oleracea Bo6g103670 I 0.869
Cla002355 Citrullus lanatus Cla002355 I 0.866
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.865
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.865
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.864
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.862
mgf022233m Mimulus guttatus mgf022233m I 0.860
Pm029002 Prunus mume Pm029002 I 0.857
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.857
TCM_012252 Theobroma cacao TCM_012252 I 0.857
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.854
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.854
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.854
LjSGA_018294.2 Lotus japonicus LjSGA_018294.2 I 0.853
Bra004212 Brassica rapa Bra004212 I 0.853
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.852
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.852
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.851
TCM_019518 Theobroma cacao TCM_019518 I 0.850
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.847
Bo6g099040 Brassica oleracea Bo6g099040 I 0.846
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.846
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.842
Bo2g061250 Brassica oleracea Bo2g061250 I 0.840
Bra038350 Brassica rapa Bra038350 I 0.840
Pm030202 Prunus mume Pm030202 I 0.839
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.839
Pm015499 Prunus mume Pm015499 I 0.838
Bra034010 Brassica rapa Bra034010 I 0.838
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.838
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.837
mgf024687m Mimulus guttatus mgf024687m I 0.836
Bo2g055640 Brassica oleracea Bo2g055640 I 0.835
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.832
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.830
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.830
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.828
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.825
TCP1 Arabidopsis thaliana AT1G67260 D 0.824
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.824
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.823