Bra034010 (Brassica rapa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bra034010 T343795_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.902 0.415
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.863 0.340
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.847 0.354
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra034010.1-P TCP 84 242

Links

Other TCP family TFs
Other Brassica rapa TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g055640 Brassica oleracea Bo2g055640 I 0.956
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.949
Bra004097 Brassica rapa Bra004097 I 0.938
Bo6g099040 Brassica oleracea Bo6g099040 I 0.934
Bra004212 Brassica rapa Bra004212 I 0.931
Bo6g103670 Brassica oleracea Bo6g103670 I 0.922
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.921
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.920
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.916
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.902
TCP1 Arabidopsis thaliana AT1G67260 D 0.902
Pm015499 Prunus mume Pm015499 I 0.901
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.898
TCM_019518 Theobroma cacao TCM_019518 I 0.898
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.895
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.890
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.890
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.890
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.886
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.885
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.884
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.883
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.883
Cla016709 Citrullus lanatus Cla016709 I 0.881
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.880
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.879
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.874
mgf022233m Mimulus guttatus mgf022233m I 0.873
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.873
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.873
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.871
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.868
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.867
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.864
mgf019480m Mimulus guttatus mgf019480m I 0.863
PK12240.1 Cannabis sativa PK12240.1 D 0.863
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.861
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.861
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.860
30167.m000856 Ricinus communis 30167.m000856 I 0.858
Cla007227 Citrullus lanatus Cla007227 I 0.857
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.853
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.851
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.849
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.849
PK19717.1 Cannabis sativa PK19717.1 D 0.847
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.847
29738.m001041 Ricinus communis 29738.m001041 I 0.845
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.845
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.844
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.843
MDP0000173048 Malus domestica MDP0000173048 I 0.842
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.842
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.842
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.842
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.842
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.839
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.838
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.838
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.838
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.838
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.838
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.838
Cla002355 Citrullus lanatus Cla002355 I 0.837
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.837
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.836
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.836
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.836
mgf026636m Mimulus guttatus mgf026636m I 0.835
TCM_011874 Theobroma cacao TCM_011874 I 0.834
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.834
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.834
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.833
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.833
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.833
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.832
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.832
30174.m008721 Ricinus communis 30174.m008721 I 0.832
F775_01923 Aegilops tauschii F775_01923 I 0.831
BRC2 Arabidopsis thaliana AT1G68800 I 0.830
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.828
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.828
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.828
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.828
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.827
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.827
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.827
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.827
LjSGA_018294.2 Lotus japonicus LjSGA_018294.2 I 0.827
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.827
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.826
Pm029002 Prunus mume Pm029002 I 0.826
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.826
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.826
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.826
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.826
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.825
OS08G0432300 Oryza sativa OS08G0432300 I 0.824
BGIOSGA028717 Oryza indica BGIOSGA028717 I 0.824
ORUFI08G17540 Oryza rufipogon ORUFI08G17540 I 0.824
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.823
MDP0000272980 Malus domestica MDP0000272980 I 0.822