MTR_7g018500 (Medicago truncatula)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 MTR_7g018500 T344048_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.916 0.466
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.874 0.481
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.869 0.481
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH21816 TCP 118 249

Links

Other TCP family TFs
Other Medicago truncatula TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.961
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.952
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.952
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.949
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.946
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.944
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.942
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.936
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.936
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.925
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.922
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.920
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.916
PK12240.1 Cannabis sativa PK12240.1 D 0.916
Cla016709 Citrullus lanatus Cla016709 I 0.916
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.911
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.909
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.909
BRC2 Arabidopsis thaliana AT1G68800 I 0.909
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.908
30167.m000856 Ricinus communis 30167.m000856 I 0.907
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.906
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.905
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.905
Cla007227 Citrullus lanatus Cla007227 I 0.905
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.905
Bra004212 Brassica rapa Bra004212 I 0.905
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.904
TCM_019518 Theobroma cacao TCM_019518 I 0.903
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.903
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.901
Cla002355 Citrullus lanatus Cla002355 I 0.901
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.901
mgf019480m Mimulus guttatus mgf019480m I 0.900
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.899
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.899
29738.m001041 Ricinus communis 29738.m001041 I 0.897
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.896
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.896
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.896
Bra004097 Brassica rapa Bra004097 I 0.894
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.892
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.890
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.890
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.890
MDP0000173048 Malus domestica MDP0000173048 I 0.889
mgf022233m Mimulus guttatus mgf022233m I 0.886
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.884
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.882
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.881
Bo6g103670 Brassica oleracea Bo6g103670 I 0.880
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.880
TCM_011874 Theobroma cacao TCM_011874 I 0.880
Pm029002 Prunus mume Pm029002 I 0.880
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.879
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.878
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.878
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.877
TCP1 Arabidopsis thaliana AT1G67260 D 0.874
Pm015499 Prunus mume Pm015499 I 0.874
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.874
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.874
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.873
Bo6g099040 Brassica oleracea Bo6g099040 I 0.872
Bra034010 Brassica rapa Bra034010 I 0.871
Bra038350 Brassica rapa Bra038350 I 0.871
Bo2g061250 Brassica oleracea Bo2g061250 I 0.871
MDP0000272980 Malus domestica MDP0000272980 I 0.870
PK19717.1 Cannabis sativa PK19717.1 D 0.869
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.865
Bo2g055640 Brassica oleracea Bo2g055640 I 0.865
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.864
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.862
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.862
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.862
mgf026636m Mimulus guttatus mgf026636m I 0.858
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.854
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.850
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.849
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.838
Si033183m.g Setaria italica Si033183m.g I 0.837
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.837
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.837
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.837
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.837
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.834
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.833
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.829
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.829
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.828
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.828
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.827
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.824
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.824