Cla016709 (Citrullus lanatus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cla016709 T344538_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.913 0.493
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.911 0.522
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.905 0.522
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla016709 TCP 107 242

Links

Other TCP family TFs
Other Citrullus lanatus TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.952
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.935
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.933
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.930
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.930
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.929
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.926
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.924
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.924
29738.m001041 Ricinus communis 29738.m001041 I 0.920
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.919
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.916
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.916
Bra004212 Brassica rapa Bra004212 I 0.915
Bo6g103670 Brassica oleracea Bo6g103670 I 0.914
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.913
PK12240.1 Cannabis sativa PK12240.1 D 0.913
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.912
TCP1 Arabidopsis thaliana AT1G67260 D 0.911
mgf019480m Mimulus guttatus mgf019480m I 0.910
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.908
Cla002355 Citrullus lanatus Cla002355 I 0.908
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.908
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.907
mgf022233m Mimulus guttatus mgf022233m I 0.906
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.906
Cla007227 Citrullus lanatus Cla007227 I 0.905
TCM_019518 Theobroma cacao TCM_019518 I 0.905
PK19717.1 Cannabis sativa PK19717.1 D 0.905
MDP0000173048 Malus domestica MDP0000173048 I 0.904
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.904
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.903
Bo6g099040 Brassica oleracea Bo6g099040 I 0.903
30167.m000856 Ricinus communis 30167.m000856 I 0.901
Bra004097 Brassica rapa Bra004097 I 0.900
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.900
TCM_011874 Theobroma cacao TCM_011874 I 0.899
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.899
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.899
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.898
Pm015499 Prunus mume Pm015499 I 0.898
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.898
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.897
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.896
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.895
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.894
Pm029002 Prunus mume Pm029002 I 0.894
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.894
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.893
BRC2 Arabidopsis thaliana AT1G68800 I 0.893
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.893
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.893
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.891
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.890
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.887
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.887
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.886
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.886
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.884
Bo2g055640 Brassica oleracea Bo2g055640 I 0.883
Bra034010 Brassica rapa Bra034010 I 0.881
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.880
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.879
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.878
MDP0000272980 Malus domestica MDP0000272980 I 0.878
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.878
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.878
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.878
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.878
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.877
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.872
Bra038350 Brassica rapa Bra038350 I 0.870
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.870
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.870
Bo2g061250 Brassica oleracea Bo2g061250 I 0.870
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.868
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.866
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.866
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.865
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.862
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.859
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.859
30174.m008721 Ricinus communis 30174.m008721 I 0.857
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.855
Pm030202 Prunus mume Pm030202 I 0.853
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.853
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.853
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.853
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.852
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.851
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.851
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.850
mgf026636m Mimulus guttatus mgf026636m I 0.850
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.848
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.848
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.844
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.843
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.842
Si033183m.g Setaria italica Si033183m.g I 0.840
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.840
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.840
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.840
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.836
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.834
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.833
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.833
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.832
Cla019282 Citrullus lanatus Cla019282 N 0.832
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.831
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.831
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.831
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.831
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.831
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.831
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.831
OS09G0410500 Oryza sativa OS09G0410500 I 0.831
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.831
OBART09G10040 Oryza barthii OBART09G10040 I 0.831
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.831
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.829
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I 0.826
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.824
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.824
Si015230m.g Setaria italica Si015230m.g I 0.823
TCM_012252 Theobroma cacao TCM_012252 I 0.822
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.822