cassava16230.m1 (Manihot esculenta)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 cassava16230.m1 T344597_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.930 0.471
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.875 0.406
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.860 0.426
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava16230.m1 TCP 115 272

Links

Other TCP family TFs
Other Manihot esculenta TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001041 Ricinus communis 29738.m001041 I 0.959
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.957
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.955
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.953
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.950
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.950
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.942
TCM_011874 Theobroma cacao TCM_011874 I 0.941
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.939
MDP0000173048 Malus domestica MDP0000173048 I 0.934
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.932
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.931
PK12240.1 Cannabis sativa PK12240.1 D 0.930
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.927
Pm029002 Prunus mume Pm029002 I 0.927
Cla016709 Citrullus lanatus Cla016709 I 0.924
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.924
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.922
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.922
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.921
Cla002355 Citrullus lanatus Cla002355 I 0.918
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.917
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.916
BRC2 Arabidopsis thaliana AT1G68800 I 0.916
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.913
Bo2g061250 Brassica oleracea Bo2g061250 I 0.913
Bra038350 Brassica rapa Bra038350 I 0.913
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.911
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.911
MDP0000272980 Malus domestica MDP0000272980 I 0.910
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.910
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.910
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.910
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.910
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.908
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.908
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.907
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.907
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.902
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.900
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.898
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.898
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.898
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.895
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.895
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.893
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.892
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.890
mgf019480m Mimulus guttatus mgf019480m I 0.889
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.886
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.885
Cla007227 Citrullus lanatus Cla007227 I 0.885
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.884
Bra004097 Brassica rapa Bra004097 I 0.883
Bo6g099040 Brassica oleracea Bo6g099040 I 0.881
Bra004212 Brassica rapa Bra004212 I 0.881
TCM_019518 Theobroma cacao TCM_019518 I 0.880
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.879
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.877
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.877
Bo6g103670 Brassica oleracea Bo6g103670 I 0.877
TCP1 Arabidopsis thaliana AT1G67260 D 0.875
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.874
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.873
30167.m000856 Ricinus communis 30167.m000856 I 0.872
mgf026636m Mimulus guttatus mgf026636m I 0.870
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.869
mgf022233m Mimulus guttatus mgf022233m I 0.869
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.869
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.868
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.868
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.868
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.867
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.867
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.866
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.866
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.865
Bra034010 Brassica rapa Bra034010 I 0.864
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.864
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.863
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.861
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.861
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.860
PK19717.1 Cannabis sativa PK19717.1 D 0.860
30174.m008721 Ricinus communis 30174.m008721 I 0.860
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I 0.859
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.859
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.858
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.856
Pm015499 Prunus mume Pm015499 I 0.856
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.856
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.853
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.853
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.850
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.850
Pm030202 Prunus mume Pm030202 I 0.850
Bo2g055640 Brassica oleracea Bo2g055640 I 0.845
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.845
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.844
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.842
MDP0000224810 Malus domestica MDP0000224810 N 0.840
Cla019282 Citrullus lanatus Cla019282 N 0.840
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.839
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.839
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.838
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.838
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.837
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.836
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.833
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.833
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.830
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.829
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.829
Si033183m.g Setaria italica Si033183m.g I 0.829
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.825
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.823