PGSC0003DMG400007467 (Solanum tuberosum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 PGSC0003DMG400007467 T344256_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.931 0.462
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.887 0.455
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.875 0.455
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400019324 TCP 108 250

Links

Other TCP family TFs
Other Solanum tuberosum TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.975
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.950
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.946
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.938
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.938
TCM_011874 Theobroma cacao TCM_011874 I 0.938
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.936
BRC2 Arabidopsis thaliana AT1G68800 I 0.936
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.933
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.932
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.931
PK12240.1 Cannabis sativa PK12240.1 D 0.931
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.928
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.928
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.927
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.927
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.927
MDP0000173048 Malus domestica MDP0000173048 I 0.926
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.924
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.924
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.922
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.921
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.920
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.920
29738.m001041 Ricinus communis 29738.m001041 I 0.919
mgf026636m Mimulus guttatus mgf026636m I 0.918
Cla007227 Citrullus lanatus Cla007227 I 0.916
Cla002355 Citrullus lanatus Cla002355 I 0.916
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.915
Pm029002 Prunus mume Pm029002 I 0.915
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.914
MDP0000272980 Malus domestica MDP0000272980 I 0.913
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.909
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.908
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.907
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.906
Bra038350 Brassica rapa Bra038350 I 0.906
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.906
Bo2g061250 Brassica oleracea Bo2g061250 I 0.906
30167.m000856 Ricinus communis 30167.m000856 I 0.902
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.901
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.900
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.900
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.899
TCM_019518 Theobroma cacao TCM_019518 I 0.898
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.897
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.896
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.894
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.894
Cla016709 Citrullus lanatus Cla016709 I 0.893
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.891
mgf019480m Mimulus guttatus mgf019480m I 0.890
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.888
Bra004212 Brassica rapa Bra004212 I 0.888
PK19717.1 Cannabis sativa PK19717.1 D 0.887
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.886
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.885
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.884
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.884
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.880
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.877
Bo6g103670 Brassica oleracea Bo6g103670 I 0.877
Bra004097 Brassica rapa Bra004097 I 0.877
mgf022233m Mimulus guttatus mgf022233m I 0.876
TCP1 Arabidopsis thaliana AT1G67260 D 0.875
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.874
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.874
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.871
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.870
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.870
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.869
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.868
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.867
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.867
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.866
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.866
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.865
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.863
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.860
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.857
Si033183m.g Setaria italica Si033183m.g I 0.855
Bo6g099040 Brassica oleracea Bo6g099040 I 0.855
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.855
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.853
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.851
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.851
MDP0000224810 Malus domestica MDP0000224810 N 0.851
Bo2g055640 Brassica oleracea Bo2g055640 I 0.849
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.845
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.845
Pm015499 Prunus mume Pm015499 I 0.844
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.844
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.841
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.841
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.841
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.840
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.837
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.837
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.837
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.837
30174.m008721 Ricinus communis 30174.m008721 I 0.835
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.833
Pm030202 Prunus mume Pm030202 I 0.832
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.832
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.832
Bra034010 Brassica rapa Bra034010 I 0.832
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.832
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.830
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.830
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.829
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.829
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.827
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.825
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.825
TCM_012252 Theobroma cacao TCM_012252 I 0.824
OBART09G10040 Oryza barthii OBART09G10040 I 0.824
OS09G0410500 Oryza sativa OS09G0410500 I 0.824
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.823
F775_01923 Aegilops tauschii F775_01923 I 0.823
mgf024687m Mimulus guttatus mgf024687m I 0.823
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.822