chr1.LjB10L14.10.nc (Lotus japonicus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 chr1.LjB10L14.10.nc T345115_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.914 0.453
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.888 0.482
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.871 0.439
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.LjB10L14.10.nc TCP 111 249

Links

Other TCP family TFs
Other Lotus japonicus TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.961
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.955
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.951
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.950
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.949
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.947
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.945
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.940
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.934
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.932
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.930
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.921
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.915
PK12240.1 Cannabis sativa PK12240.1 D 0.914
30167.m000856 Ricinus communis 30167.m000856 I 0.913
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.912
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.910
BRC2 Arabidopsis thaliana AT1G68800 I 0.909
Cla007227 Citrullus lanatus Cla007227 I 0.909
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.907
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.905
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.903
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.903
TCM_019518 Theobroma cacao TCM_019518 I 0.902
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.901
MDP0000173048 Malus domestica MDP0000173048 I 0.900
Cla016709 Citrullus lanatus Cla016709 I 0.899
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.898
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.898
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.898
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.898
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.897
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.897
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.896
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.895
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.891
29738.m001041 Ricinus communis 29738.m001041 I 0.891
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.890
PK19717.1 Cannabis sativa PK19717.1 D 0.888
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.887
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.887
MDP0000272980 Malus domestica MDP0000272980 I 0.886
Bra004212 Brassica rapa Bra004212 I 0.886
mgf019480m Mimulus guttatus mgf019480m I 0.885
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.885
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.885
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.884
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.883
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.883
Bra004097 Brassica rapa Bra004097 I 0.882
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.880
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.879
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.879
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.879
Pm029002 Prunus mume Pm029002 I 0.879
Cla002355 Citrullus lanatus Cla002355 I 0.878
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.877
TCM_011874 Theobroma cacao TCM_011874 I 0.877
Bo6g103670 Brassica oleracea Bo6g103670 I 0.875
Bo6g099040 Brassica oleracea Bo6g099040 I 0.874
Bra034010 Brassica rapa Bra034010 I 0.873
TCP1 Arabidopsis thaliana AT1G67260 D 0.871
Bra038350 Brassica rapa Bra038350 I 0.870
Bo2g061250 Brassica oleracea Bo2g061250 I 0.870
Bo2g055640 Brassica oleracea Bo2g055640 I 0.869
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.867
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.864
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.863
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.862
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.862
Pm015499 Prunus mume Pm015499 I 0.859
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.859
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.858
mgf022233m Mimulus guttatus mgf022233m I 0.855
mgf026636m Mimulus guttatus mgf026636m I 0.852
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.851
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.848
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.848
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.845
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.844
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.843
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.841
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.834
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.832
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.830
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.830
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.830
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.829
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.827
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.826
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.823
30174.m008721 Ricinus communis 30174.m008721 I 0.822