BRC2 (Arabidopsis thaliana)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 AT1G68800 T343680_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes protein with TCP (TB1,CYC,PCF) domain which is likely to be involved in DNA binding and protein-protein interactions. Based on genome analysis, there is a 9-member gene family that possesses this domain in Arabidopsis. Orthologue of Antirrhinum gene CYCLOIDEA.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.957 0.523
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.873 0.461
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.872 0.430
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G68800.1 TCP 110 237
AT1G68800.2 TCP 110 237

Links

Other TCP family TFs
Other Arabidopsis thaliana TFs

133 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.980
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.976
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.976
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.976
PK12240.1 Cannabis sativa PK12240.1 D 0.957
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.948
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.946
MDP0000272980 Malus domestica MDP0000272980 I 0.941
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.941
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.938
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.936
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.935
30167.m000856 Ricinus communis 30167.m000856 I 0.934
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.933
MDP0000173048 Malus domestica MDP0000173048 I 0.933
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.931
Bra038350 Brassica rapa Bra038350 I 0.928
Bo2g061250 Brassica oleracea Bo2g061250 I 0.928
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.925
Cla002355 Citrullus lanatus Cla002355 I 0.925
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.923
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.923
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.922
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.922
Pm029002 Prunus mume Pm029002 I 0.921
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.921
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.920
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.920
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.917
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.917
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.917
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.916
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.916
TCM_011874 Theobroma cacao TCM_011874 I 0.914
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.913
mgf024687m Mimulus guttatus mgf024687m I 0.912
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.911
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.911
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.911
29738.m001041 Ricinus communis 29738.m001041 I 0.910
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.909
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.909
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.909
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.909
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.907
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.906
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.906
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.905
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.903
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.899
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.899
mgf019480m Mimulus guttatus mgf019480m I 0.897
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.897
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.896
Bra004097 Brassica rapa Bra004097 I 0.895
Cla016709 Citrullus lanatus Cla016709 I 0.893
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.891
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.891
TCM_019518 Theobroma cacao TCM_019518 I 0.889
Bo6g103670 Brassica oleracea Bo6g103670 I 0.885
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.884
Cla007227 Citrullus lanatus Cla007227 I 0.884
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.884
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.883
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.882
mgf026636m Mimulus guttatus mgf026636m I 0.882
Bra004212 Brassica rapa Bra004212 I 0.881
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.879
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.879
mgf022233m Mimulus guttatus mgf022233m I 0.879
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.878
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.878
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.878
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.876
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.874
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.874
PK19717.1 Cannabis sativa PK19717.1 D 0.873
TCP1 Arabidopsis thaliana AT1G67260 D 0.872
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.870
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.870
Pm015499 Prunus mume Pm015499 I 0.869
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.868
TCM_012252 Theobroma cacao TCM_012252 I 0.867
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.866
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.865
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.865
Pm030202 Prunus mume Pm030202 I 0.862
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.862
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.860
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.857
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.857
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.857
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.857
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.855
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.855
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.855
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.854
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.854
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.853
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.852
Bo6g099040 Brassica oleracea Bo6g099040 I 0.851
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.847
30174.m008721 Ricinus communis 30174.m008721 I 0.846
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.846
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.845
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.845
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.845
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.844
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.844
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.844
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.843
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.843
MDP0000224810 Malus domestica MDP0000224810 N 0.840
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.838
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.838
LjSGA_018294.2 Lotus japonicus LjSGA_018294.2 I 0.836
SELMODRAFT_7330 Selaginella moellendorffii SELMODRAFT_7330 I 0.836
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.835
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.835
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.834
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I 0.834
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.834
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.833
Si033183m.g Setaria italica Si033183m.g I 0.833
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.831
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.831
Bra034010 Brassica rapa Bra034010 I 0.830
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.829
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.829
Bo2g055640 Brassica oleracea Bo2g055640 I 0.826
AC190734.2_FG003 Zea mays AC190734.2_FG003 I 0.823
Cla019282 Citrullus lanatus Cla019282 N 0.822