Cucsa.238090 (Cucumis sativus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cucsa.238090 T344645_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.922 0.424
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.906 0.470
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.894 0.490
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.238090.1 TCP 119 269

Links

Other TCP family TFs
Other Cucumis sativus TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla016709 Citrullus lanatus Cla016709 I 0.952
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.946
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.944
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.940
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.934
Bo6g103670 Brassica oleracea Bo6g103670 I 0.928
Bra004097 Brassica rapa Bra004097 I 0.928
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.926
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.925
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.925
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.923
PK12240.1 Cannabis sativa PK12240.1 D 0.922
30167.m000856 Ricinus communis 30167.m000856 I 0.921
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.920
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.918
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.918
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.913
BRC2 Arabidopsis thaliana AT1G68800 I 0.913
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.913
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.912
Bra004212 Brassica rapa Bra004212 I 0.911
29738.m001041 Ricinus communis 29738.m001041 I 0.911
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.910
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.910
Cla007227 Citrullus lanatus Cla007227 I 0.910
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.909
TCP1 Arabidopsis thaliana AT1G67260 D 0.906
Bo6g099040 Brassica oleracea Bo6g099040 I 0.906
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.905
MDP0000272980 Malus domestica MDP0000272980 I 0.905
mgf019480m Mimulus guttatus mgf019480m I 0.902
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.901
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.901
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.901
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.901
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.900
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.900
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.899
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.899
MDP0000173048 Malus domestica MDP0000173048 I 0.899
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.898
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.898
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.897
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.897
TCM_019518 Theobroma cacao TCM_019518 I 0.897
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.896
Bra034010 Brassica rapa Bra034010 I 0.895
Bo2g055640 Brassica oleracea Bo2g055640 I 0.894
PK19717.1 Cannabis sativa PK19717.1 D 0.894
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.893
Pm029002 Prunus mume Pm029002 I 0.893
Cla002355 Citrullus lanatus Cla002355 I 0.893
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.893
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.892
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.892
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.891
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.891
TCM_011874 Theobroma cacao TCM_011874 I 0.891
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.891
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.891
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.890
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.888
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.885
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.884
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.884
Pm015499 Prunus mume Pm015499 I 0.883
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.882
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.881
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.880
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.880
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.878
Bo2g061250 Brassica oleracea Bo2g061250 I 0.875
Bra038350 Brassica rapa Bra038350 I 0.875
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.873
mgf022233m Mimulus guttatus mgf022233m I 0.873
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.870
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.869
Pm030202 Prunus mume Pm030202 I 0.866
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.866
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.863
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.862
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.861
TCM_012252 Theobroma cacao TCM_012252 I 0.859
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.855
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.852
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.852
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.851
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.851
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.848
mgf024687m Mimulus guttatus mgf024687m I 0.848
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.846
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.845
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.842
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.842
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.841
mgf026636m Mimulus guttatus mgf026636m I 0.840
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.840
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.840
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.839
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.838
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.837
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.837
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.836
30174.m008721 Ricinus communis 30174.m008721 I 0.836
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.835
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.834
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.834
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.833
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.833
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.833
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.833
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.829
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I 0.827
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.826
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.825
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.823
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.823
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.822
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.822