Bra004212 (Brassica rapa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bra004212 T343767_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.958 0.680
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.900 0.388
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.874 0.422
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004212.1-P TCP 84 230

Links

Other TCP family TFs
Other Brassica rapa TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g103670 Brassica oleracea Bo6g103670 I 0.969
Bo6g099040 Brassica oleracea Bo6g099040 I 0.962
TCP1 Arabidopsis thaliana AT1G67260 D 0.958
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.942
Bra004097 Brassica rapa Bra004097 I 0.941
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.932
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.932
Bra034010 Brassica rapa Bra034010 I 0.931
Bo2g055640 Brassica oleracea Bo2g055640 I 0.930
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.924
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.919
Cla016709 Citrullus lanatus Cla016709 I 0.915
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.911
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.911
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.909
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.908
TCM_019518 Theobroma cacao TCM_019518 I 0.907
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.905
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.904
mgf019480m Mimulus guttatus mgf019480m I 0.902
30167.m000856 Ricinus communis 30167.m000856 I 0.902
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.902
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.901
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.900
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.900
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.900
PK12240.1 Cannabis sativa PK12240.1 D 0.900
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.896
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.895
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.894
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.893
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.892
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.890
Cla007227 Citrullus lanatus Cla007227 I 0.889
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.888
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.888
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.888
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.888
Pm015499 Prunus mume Pm015499 I 0.888
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.888
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.887
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.887
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.886
mgf022233m Mimulus guttatus mgf022233m I 0.885
29738.m001041 Ricinus communis 29738.m001041 I 0.885
BRC2 Arabidopsis thaliana AT1G68800 I 0.881
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.881
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.880
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.878
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.878
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.876
PK19717.1 Cannabis sativa PK19717.1 D 0.874
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.874
MDP0000173048 Malus domestica MDP0000173048 I 0.871
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.868
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.866
Pm029002 Prunus mume Pm029002 I 0.866
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.866
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.866
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.864
Cla002355 Citrullus lanatus Cla002355 I 0.864
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.864
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.863
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.858
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.857
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.855
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.854
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.853
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.851
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.851
TCM_011874 Theobroma cacao TCM_011874 I 0.851
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.849
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.848
Bra038350 Brassica rapa Bra038350 I 0.848
Bo2g061250 Brassica oleracea Bo2g061250 I 0.848
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.847
MDP0000272980 Malus domestica MDP0000272980 I 0.846
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.840
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.836
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.835
mgf026636m Mimulus guttatus mgf026636m I 0.834
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.833
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.831
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.831
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.831
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.831
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.830
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.829
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.828
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.827