Cucsa.280880 (Cucumis sativus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cucsa.280880 T344648_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS

SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.940 0.462
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC

GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.868 0.428
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH

DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.866 0.407
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM

KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.823 0.414
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.280880.1 TCP 87 231

Links

Other TCP family TFs
Other Cucumis sativus TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MDP0000272980 Malus domestica MDP0000272980 I 0.952
BRC2 Arabidopsis thaliana AT1G68800 I 0.948
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.948
Cla002355 Citrullus lanatus Cla002355 I 0.945
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.944
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.941
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.941
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.941
PK12240.1 Cannabis sativa PK12240.1 D 0.940
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.936
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.932
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.932
Pm029002 Prunus mume Pm029002 I 0.932
MDP0000173048 Malus domestica MDP0000173048 I 0.930
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.930
30167.m000856 Ricinus communis 30167.m000856 I 0.928
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.927
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.925
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.921
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.920
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.920
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.919
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.918
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.917
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.917
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.917
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.916
29738.m001041 Ricinus communis 29738.m001041 I 0.914
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.914
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.912
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.912
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.912
TCM_011874 Theobroma cacao TCM_011874 I 0.912
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.912
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.911
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.910
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.908
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.907
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.906
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.905
mgf024687m Mimulus guttatus mgf024687m I 0.904
Bo2g061250 Brassica oleracea Bo2g061250 I 0.902
Bra038350 Brassica rapa Bra038350 I 0.902
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.901
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.901
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.901
Cla007227 Citrullus lanatus Cla007227 I 0.899
Bra004097 Brassica rapa Bra004097 I 0.899
mgf019480m Mimulus guttatus mgf019480m I 0.895
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.893
Bo6g103670 Brassica oleracea Bo6g103670 I 0.892
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.886
Cla016709 Citrullus lanatus Cla016709 I 0.886
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.886
TCM_019518 Theobroma cacao TCM_019518 I 0.885
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.883
mgf026636m Mimulus guttatus mgf026636m I 0.883
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.881
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.881
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.881
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.881
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.880
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.879
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.879
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.878
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.878
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.877
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.876
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.876
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.876
Bra004212 Brassica rapa Bra004212 I 0.876
Pm015499 Prunus mume Pm015499 I 0.876
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.872
TCM_012252 Theobroma cacao TCM_012252 I 0.872
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.872
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.871
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.870
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.869
Pm030202 Prunus mume Pm030202 I 0.869
PK19717.1 Cannabis sativa PK19717.1 D 0.868
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.868
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.868
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.867
TCP1 Arabidopsis thaliana AT1G67260 D 0.866
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.866
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.866
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.866
Bo6g099040 Brassica oleracea Bo6g099040 I 0.866
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.865
mgf022233m Mimulus guttatus mgf022233m I 0.864
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.864
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.861
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.861
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.861
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.861
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.859
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.858
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.858
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.857
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.857
30174.m008721 Ricinus communis 30174.m008721 I 0.855
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.853
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.852
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.852
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.851
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.850
Bo2g055640 Brassica oleracea Bo2g055640 I 0.847
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.846
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.846
MDP0000224810 Malus domestica MDP0000224810 N 0.845
LjSGA_018294.2 Lotus japonicus LjSGA_018294.2 I 0.845
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.844
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.841
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.841
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.840
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.839
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.837
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.836
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.835
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.834
Bra034010 Brassica rapa Bra034010 I 0.833
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.833
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.830
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.829
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.827
Cla019282 Citrullus lanatus Cla019282 N 0.824
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.823
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.823
TB1 Oryza sativa OS03G0706500 D 0.823
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.823
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.823
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.823