orange1.1g039323m.g (Citrus sinensis)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 orange1.1g039323m.g T344982_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.904 0.458
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.873 0.425
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.860 0.412
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g039323m TCP 35 187

Links

Other TCP family TFs
Other Citrus sinensis TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.983
TCM_011874 Theobroma cacao TCM_011874 I 0.956
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.955
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.953
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.950
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.950
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.949
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.948
29738.m001041 Ricinus communis 29738.m001041 I 0.946
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.939
MDP0000173048 Malus domestica MDP0000173048 I 0.934
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.928
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.926
MDP0000272980 Malus domestica MDP0000272980 I 0.923
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.919
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.919
Pm029002 Prunus mume Pm029002 I 0.919
Cla002355 Citrullus lanatus Cla002355 I 0.919
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.917
Bra038350 Brassica rapa Bra038350 I 0.914
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.914
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.914
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.914
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.914
Bo2g061250 Brassica oleracea Bo2g061250 I 0.914
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.914
BRC2 Arabidopsis thaliana AT1G68800 I 0.911
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.911
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.911
Cla016709 Citrullus lanatus Cla016709 I 0.908
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.906
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.906
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.906
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.906
PK12240.1 Cannabis sativa PK12240.1 D 0.904
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.903
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.901
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.899
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.899
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.898
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.897
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.896
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.895
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.893
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.892
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.892
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.890
Cla007227 Citrullus lanatus Cla007227 I 0.890
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.890
mgf026636m Mimulus guttatus mgf026636m I 0.889
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.889
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.889
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.888
30167.m000856 Ricinus communis 30167.m000856 I 0.888
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.888
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.888
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.887
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.887
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.886
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.885
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.884
mgf019480m Mimulus guttatus mgf019480m I 0.880
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.879
30174.m008721 Ricinus communis 30174.m008721 I 0.879
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.878
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.878
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.875
TCM_019518 Theobroma cacao TCM_019518 I 0.874
PK19717.1 Cannabis sativa PK19717.1 D 0.873
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.871
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.870
Bo6g103670 Brassica oleracea Bo6g103670 I 0.868
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.868
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.866
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.865
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.865
Bra004212 Brassica rapa Bra004212 I 0.864
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.864
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.862
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.862
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.861
TCP1 Arabidopsis thaliana AT1G67260 D 0.860
Pm015499 Prunus mume Pm015499 I 0.858
Bo6g099040 Brassica oleracea Bo6g099040 I 0.857
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.856
MDP0000224810 Malus domestica MDP0000224810 N 0.856
mgf022233m Mimulus guttatus mgf022233m I 0.855
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.853
Bra004097 Brassica rapa Bra004097 I 0.852
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.849
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.849
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.849
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.847
Pm030202 Prunus mume Pm030202 I 0.847
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.843
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.842
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.840
mgf024687m Mimulus guttatus mgf024687m I 0.838
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.837
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.833
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.830
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.829
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.828
Bo2g055640 Brassica oleracea Bo2g055640 I 0.828
Cla019282 Citrullus lanatus Cla019282 N 0.828
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.827
MDP0000219838 Malus domestica MDP0000219838 N 0.827
Bra034010 Brassica rapa Bra034010 I 0.827
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I 0.826
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.826
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.826
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I 0.825
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.825
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.824
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.824
TCM_012252 Theobroma cacao TCM_012252 I 0.822
Si033183m.g Setaria italica Si033183m.g I 0.822
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I 0.822