Solyc04g006980.1 (Solanum lycopersicum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Solyc04g006980.1 T344410_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.931 0.468
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.881 0.468
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.863 0.418
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc04g006980.1.1 TCP 105 245

Links

Other TCP family TFs
Other Solanum lycopersicum TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.975
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.948
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.945
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.938
BRC2 Arabidopsis thaliana AT1G68800 I 0.938
TCM_011874 Theobroma cacao TCM_011874 I 0.936
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.935
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.935
MDP0000173048 Malus domestica MDP0000173048 I 0.931
PK12240.1 Cannabis sativa PK12240.1 D 0.931
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.931
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.930
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.928
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.928
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.928
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.927
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.926
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.926
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.922
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.921
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.921
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.919
Cla002355 Citrullus lanatus Cla002355 I 0.919
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.918
Pm029002 Prunus mume Pm029002 I 0.917
29738.m001041 Ricinus communis 29738.m001041 I 0.917
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.917
mgf026636m Mimulus guttatus mgf026636m I 0.914
MDP0000272980 Malus domestica MDP0000272980 I 0.911
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.911
Bo2g061250 Brassica oleracea Bo2g061250 I 0.910
Bra038350 Brassica rapa Bra038350 I 0.910
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.909
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.909
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.908
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.907
Cla007227 Citrullus lanatus Cla007227 I 0.907
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.905
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.904
30167.m000856 Ricinus communis 30167.m000856 I 0.903
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.900
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.899
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.895
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.895
Cla016709 Citrullus lanatus Cla016709 I 0.894
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.894
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.893
TCM_019518 Theobroma cacao TCM_019518 I 0.893
mgf019480m Mimulus guttatus mgf019480m I 0.893
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.892
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.888
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.887
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.887
mgf022233m Mimulus guttatus mgf022233m I 0.886
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.885
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.884
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.881
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.881
PK19717.1 Cannabis sativa PK19717.1 D 0.881
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.880
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.880
Bra004212 Brassica rapa Bra004212 I 0.880
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.879
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.878
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.876
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.876
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.875
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.874
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.873
Bra004097 Brassica rapa Bra004097 I 0.873
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.868
Bo6g103670 Brassica oleracea Bo6g103670 I 0.868
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.868
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.868
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.867
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.867
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.864
TCP1 Arabidopsis thaliana AT1G67260 D 0.863
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.862
Si033183m.g Setaria italica Si033183m.g I 0.859
Pm015499 Prunus mume Pm015499 I 0.853
MDP0000224810 Malus domestica MDP0000224810 N 0.853
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.853
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.853
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.852
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.852
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.852
Bo6g099040 Brassica oleracea Bo6g099040 I 0.851
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.850
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.849
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.848
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.846
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.846
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.842
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.842
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.841
Pm030202 Prunus mume Pm030202 I 0.840
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.840
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.839
Bo2g055640 Brassica oleracea Bo2g055640 I 0.839
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.838
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.838
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.838
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.838
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.836
30174.m008721 Ricinus communis 30174.m008721 I 0.835
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.834
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.834
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.832
Bra034010 Brassica rapa Bra034010 I 0.832
mgf024687m Mimulus guttatus mgf024687m I 0.832
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.831
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.831
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.831
OBART09G10040 Oryza barthii OBART09G10040 I 0.830
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.830
OS09G0410500 Oryza sativa OS09G0410500 I 0.830
Si015230m.g Setaria italica Si015230m.g I 0.829
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.826
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.826
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.826
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.825
TCM_012252 Theobroma cacao TCM_012252 I 0.824
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.824