Bo2g061250 (Brassica oleracea)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bo2g061250 T343727_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.887 0.415
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.882 0.415
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.860 0.398
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g061250.1 TCP 103 225

Links

Other TCP family TFs
Other Brassica oleracea TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra038350 Brassica rapa Bra038350 I 0.983
BRC2 Arabidopsis thaliana AT1G68800 I 0.928
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.926
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.921
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.921
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.921
29738.m001041 Ricinus communis 29738.m001041 I 0.918
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.916
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.914
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.914
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.913
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.910
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.910
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.910
MDP0000173048 Malus domestica MDP0000173048 I 0.909
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.908
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.906
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.905
Pm029002 Prunus mume Pm029002 I 0.904
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.904
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.902
Cla002355 Citrullus lanatus Cla002355 I 0.901
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.900
MDP0000272980 Malus domestica MDP0000272980 I 0.900
TCM_011874 Theobroma cacao TCM_011874 I 0.899
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.898
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.895
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.893
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.890
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.889
PK12240.1 Cannabis sativa PK12240.1 D 0.887
30167.m000856 Ricinus communis 30167.m000856 I 0.885
TCP1 Arabidopsis thaliana AT1G67260 D 0.882
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.881
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.881
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.879
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.879
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.879
TCM_019518 Theobroma cacao TCM_019518 I 0.877
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.875
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.874
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.872
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.871
Cla016709 Citrullus lanatus Cla016709 I 0.870
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.870
Cla007227 Citrullus lanatus Cla007227 I 0.869
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.869
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.868
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.867
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.867
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.866
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.866
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.861
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.861
PK19717.1 Cannabis sativa PK19717.1 D 0.860
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.859
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.859
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.859
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.859
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.858
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.856
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.856
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.856
mgf019480m Mimulus guttatus mgf019480m I 0.855
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.855
mgf026636m Mimulus guttatus mgf026636m I 0.852
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.851
Bo6g103670 Brassica oleracea Bo6g103670 I 0.848
Bra004212 Brassica rapa Bra004212 I 0.848
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.847
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.847
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.846
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.846
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.845
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.845
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.844
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.844
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.844
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.842
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.841
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.840
Bra004097 Brassica rapa Bra004097 I 0.840
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.840
Bo6g099040 Brassica oleracea Bo6g099040 I 0.840
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.836
Pm015499 Prunus mume Pm015499 I 0.835
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.834
30174.m008721 Ricinus communis 30174.m008721 I 0.833
mgf022233m Mimulus guttatus mgf022233m I 0.832
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.829
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.824
mgf024687m Mimulus guttatus mgf024687m I 0.824
Bo2g055640 Brassica oleracea Bo2g055640 I 0.822