Cla002355 (Citrullus lanatus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cla002355 T344527_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.919 0.460
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.860 0.432
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.848 0.388
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla002355 TCP 89 227

Links

Other TCP family TFs
Other Citrullus lanatus TFs

106 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.945
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.935
MDP0000173048 Malus domestica MDP0000173048 I 0.931
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.930
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.928
29738.m001041 Ricinus communis 29738.m001041 I 0.926
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.925
BRC2 Arabidopsis thaliana AT1G68800 I 0.925
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.924
Pm029002 Prunus mume Pm029002 I 0.922
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.922
MDP0000272980 Malus domestica MDP0000272980 I 0.922
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.919
PK12240.1 Cannabis sativa PK12240.1 D 0.919
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.919
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.919
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.918
TCM_011874 Theobroma cacao TCM_011874 I 0.917
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.916
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.915
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.915
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.915
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.912
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.911
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.911
Cla016709 Citrullus lanatus Cla016709 I 0.908
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.908
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.906
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.906
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.904
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.904
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.901
Bo2g061250 Brassica oleracea Bo2g061250 I 0.901
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.901
Bra038350 Brassica rapa Bra038350 I 0.901
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.901
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.893
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.893
30167.m000856 Ricinus communis 30167.m000856 I 0.891
mgf022233m Mimulus guttatus mgf022233m I 0.889
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.889
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.889
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.889
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.888
mgf019480m Mimulus guttatus mgf019480m I 0.888
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.888
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.886
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.886
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.885
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.885
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.885
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.884
mgf026636m Mimulus guttatus mgf026636m I 0.883
TCM_019518 Theobroma cacao TCM_019518 I 0.883
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.882
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.880
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.880
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.878
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.877
Cla007227 Citrullus lanatus Cla007227 I 0.873
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.871
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.871
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.871
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.871
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.871
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.870
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.868
Bra004097 Brassica rapa Bra004097 I 0.868
30174.m008721 Ricinus communis 30174.m008721 I 0.868
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.867
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.866
mgf024687m Mimulus guttatus mgf024687m I 0.865
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.865
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.864
Bra004212 Brassica rapa Bra004212 I 0.864
PK19717.1 Cannabis sativa PK19717.1 D 0.860
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.859
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.858
TCM_012252 Theobroma cacao TCM_012252 I 0.853
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.853
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.852
Bo6g103670 Brassica oleracea Bo6g103670 I 0.851
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.848
TCP1 Arabidopsis thaliana AT1G67260 D 0.848
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.848
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.848
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.847
Pm015499 Prunus mume Pm015499 I 0.845
Bo6g099040 Brassica oleracea Bo6g099040 I 0.845
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.843
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.842
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.842
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.840
Pm030202 Prunus mume Pm030202 I 0.839
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.839
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.838
MDP0000224810 Malus domestica MDP0000224810 N 0.837
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.837
Bra034010 Brassica rapa Bra034010 I 0.837
Bo2g055640 Brassica oleracea Bo2g055640 I 0.835
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.831
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.831
Cla019282 Citrullus lanatus Cla019282 N 0.827
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.826
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.826
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.823