TCP1 (Arabidopsis thaliana)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 AT1G67260 T343679_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes protein with TCP (TB1,CYC,PCF) domain which is likely to be involved in DNA binding and protein-protein interactions. Based on genome analysis, there is a 9-member gene family that possesses this domain in Arabidopsis. Orthologue of Antirrhinum gene CYCLOIDEA.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH

DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC

GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.896 0.431
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS

SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.870 0.366
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G67260.1 TCP 85 237
AT1G67260.2 TCP 85 237
AT1G67260.3 TCP 85 237

Links

Other TCP family TFs
Other Arabidopsis thaliana TFs

88 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra004212 Brassica rapa Bra004212 I 0.958
Bo6g103670 Brassica oleracea Bo6g103670 I 0.947
Bo6g099040 Brassica oleracea Bo6g099040 I 0.939
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.936
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.932
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.931
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.926
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.925
Bra004097 Brassica rapa Bra004097 I 0.919
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.916
Cla016709 Citrullus lanatus Cla016709 I 0.911
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.908
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.906
TCM_019518 Theobroma cacao TCM_019518 I 0.905
Cla007227 Citrullus lanatus Cla007227 I 0.905
Bra034010 Brassica rapa Bra034010 I 0.902
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.898
Bo2g055640 Brassica oleracea Bo2g055640 I 0.898
PK19717.1 Cannabis sativa PK19717.1 D 0.896
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.894
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.891
mgf019480m Mimulus guttatus mgf019480m I 0.889
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.887
30167.m000856 Ricinus communis 30167.m000856 I 0.887
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.885
Bo2g061250 Brassica oleracea Bo2g061250 I 0.882
Bra038350 Brassica rapa Bra038350 I 0.882
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.882
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.879
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.879
29738.m001041 Ricinus communis 29738.m001041 I 0.878
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.877
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.876
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.876
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.875
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.875
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.874
Pm015499 Prunus mume Pm015499 I 0.872
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.872
BRC2 Arabidopsis thaliana AT1G68800 I 0.872
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.871
MDP0000173048 Malus domestica MDP0000173048 I 0.870
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.870
PK12240.1 Cannabis sativa PK12240.1 D 0.870
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.870
mgf022233m Mimulus guttatus mgf022233m I 0.868
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.866
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.866
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.866
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.866
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.866
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.865
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.864
Pm029002 Prunus mume Pm029002 I 0.864
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.863
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.863
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.861
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.860
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.860
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.859
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.857
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.856
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.852
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.852
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.849
Cla002355 Citrullus lanatus Cla002355 I 0.848
TCM_011874 Theobroma cacao TCM_011874 I 0.847
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.847
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.846
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.845
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.844
MDP0000272980 Malus domestica MDP0000272980 I 0.842
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.838
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.834
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.832
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.831
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.829
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.828
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.827
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.827
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.827
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.827
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.826
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.825
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.824
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.824
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.822