POPTR_0012s05660 (Populus trichocarpa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 POPTR_0012s05660 T344298_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.846 0.413
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.829 0.380
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s05660.1 TCP 125 274

Links

Other TCP family TFs
Other Populus trichocarpa TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.979
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.970
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.959
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.955
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.954
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.954
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.949
30174.m008721 Ricinus communis 30174.m008721 I 0.938
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.917
Cla019282 Citrullus lanatus Cla019282 N 0.913
MDP0000224810 Malus domestica MDP0000224810 N 0.909
Cucsa.198860 Cucumis sativus Cucsa.198860 N 0.908
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.898
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.898
TCM_012252 Theobroma cacao TCM_012252 I 0.896
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.892
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.891
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.891
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.889
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.889
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.888
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.887
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.884
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.884
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.884
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.884
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.883
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.880
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.879
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.877
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.876
Pm015499 Prunus mume Pm015499 I 0.876
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.876
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.875
TCM_019518 Theobroma cacao TCM_019518 I 0.875
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.874
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.874
MDP0000219838 Malus domestica MDP0000219838 N 0.873
29738.m001041 Ricinus communis 29738.m001041 I 0.873
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.872
Pm030202 Prunus mume Pm030202 I 0.872
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.871
TCM_011874 Theobroma cacao TCM_011874 I 0.870
F775_01923 Aegilops tauschii F775_01923 I 0.870
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.870
Lus10032465.g Linum usitatissimum Lus10032465.g N 0.869
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.869
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.867
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.867
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.867
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.866
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.866
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.864
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.864
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.864
Si015230m.g Setaria italica Si015230m.g I 0.863
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.863
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.863
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.862
MDP0000173048 Malus domestica MDP0000173048 I 0.862
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.862
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.862
mgf026636m Mimulus guttatus mgf026636m I 0.861
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.861
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.861
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I 0.860
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.860
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.860
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.860
OMERI08G12900 Oryza meridionalis OMERI08G12900 I 0.859
Si033183m.g Setaria italica Si033183m.g I 0.859
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.858
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.858
MDP0000272980 Malus domestica MDP0000272980 I 0.857
mgf024687m Mimulus guttatus mgf024687m I 0.856
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.856
OBART09G10040 Oryza barthii OBART09G10040 I 0.856
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.856
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.856
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.856
OS09G0410500 Oryza sativa OS09G0410500 I 0.856
OGLUM08G16380 Oryza glumaepatula OGLUM08G16380 I 0.855
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.855
ORUFI08G17540 Oryza rufipogon ORUFI08G17540 I 0.855
OS08G0432300 Oryza sativa OS08G0432300 I 0.855
BRC2 Arabidopsis thaliana AT1G68800 I 0.855
BGIOSGA028717 Oryza indica BGIOSGA028717 I 0.855
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.854
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.854
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.854
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.854
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.854
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.854
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.853
ONIVA08G16720 Oryza nivara ONIVA08G16720 I 0.852
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I 0.852
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.852
Cla002355 Citrullus lanatus Cla002355 I 0.852
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.852
Pm029002 Prunus mume Pm029002 I 0.852
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.851
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.851
Cla016709 Citrullus lanatus Cla016709 I 0.848
30167.m000856 Ricinus communis 30167.m000856 I 0.847
Cagra.1681s0023 Capsella grandiflora Cagra.1681s0023 I 0.847
Carubv10013748m.g Capsella rubella Carubv10013748m.g I 0.847
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.847
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I 0.847
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.846
PK19717.1 Cannabis sativa PK19717.1 D 0.846
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.846
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.846
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.846
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.846
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.846
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.845
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.845
mgf022233m Mimulus guttatus mgf022233m I 0.843
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.842
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.842
Bra034010 Brassica rapa Bra034010 I 0.842
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.841
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.840
Bra038350 Brassica rapa Bra038350 I 0.840
Bo2g061250 Brassica oleracea Bo2g061250 I 0.840
Bostr.19424s0807 Boechera stricta Bostr.19424s0807 I 0.839
OBART08G15630 Oryza barthii OBART08G15630 N 0.838
Bo3g071560 Brassica oleracea Bo3g071560 I 0.837
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.836
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.836
Bo2g055640 Brassica oleracea Bo2g055640 I 0.836
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.835
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.835
Bo5g117410 Brassica oleracea Bo5g117410 N 0.834
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.834
Bra001710 Brassica rapa Bra001710 I 0.833
Bo6g103670 Brassica oleracea Bo6g103670 I 0.833
Bra004212 Brassica rapa Bra004212 I 0.831
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.831
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.830
Cla007227 Citrullus lanatus Cla007227 I 0.830
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.829
TCP1 Arabidopsis thaliana AT1G67260 D 0.829
BRC1 Arabidopsis thaliana AT3G18550 I 0.828
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.828
Cla018797 Citrullus lanatus Cla018797 N 0.826
Bo1g117490 Brassica oleracea Bo1g117490 I 0.825
Thhalv10021948m.g Eutrema salsugineum Thhalv10021948m.g N 0.825
Bra037579 Brassica rapa Bra037579 I 0.825
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.824
Bo6g099040 Brassica oleracea Bo6g099040 I 0.824
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.823