Pavir.Fa00870 (Panicum virgatum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Pavir.Fa00870 T345000_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TB1
M01312_2.00 		Oryza sativa
GGSCCCCCYM
KRGGGGGSCC		 PBM
Lambert et al.(2019)
pTH8740 		0.869 0.436
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fa00870.1.p TCP 85 209

Links

Other TCP family TFs
Other Panicum virgatum TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I 0.949
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.938
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.937
Si015230m.g Setaria italica Si015230m.g I 0.935
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.933
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.933
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.930
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.929
Si033183m.g Setaria italica Si033183m.g I 0.926
F775_01923 Aegilops tauschii F775_01923 I 0.926
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.921
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.919
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.918
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.917
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.917
OS09G0410500 Oryza sativa OS09G0410500 I 0.916
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.916
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.916
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.916
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.916
OBART09G10040 Oryza barthii OBART09G10040 I 0.916
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.916
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.915
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.915
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.914
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.913
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.911
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.910
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.910
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.909
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.906
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.903
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I 0.899
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.899
ONIVA08G16720 Oryza nivara ONIVA08G16720 I 0.896
OGLUM08G16380 Oryza glumaepatula OGLUM08G16380 I 0.893
OMERI08G12900 Oryza meridionalis OMERI08G12900 I 0.892
ORUFI08G17540 Oryza rufipogon ORUFI08G17540 I 0.886
OS08G0432300 Oryza sativa OS08G0432300 I 0.886
BGIOSGA028717 Oryza indica BGIOSGA028717 I 0.886
OBART08G15630 Oryza barthii OBART08G15630 N 0.875
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.870
Pm030202 Prunus mume Pm030202 I 0.870
TB1 Oryza sativa OS03G0706500 D 0.869
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.869
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.869
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.869
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.867
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.867
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.866
30174.m008721 Ricinus communis 30174.m008721 I 0.862
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.861
GRMZM2G414114 Zea mays GRMZM2G414114 N 0.861
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.860
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.860
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.860
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.860
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.859
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.859
GRMZM2G458087 Zea mays GRMZM2G458087 N 0.858
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.858
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.857
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.856
OBART03G31290 Oryza barthii OBART03G31290 I 0.854
TCM_012252 Theobroma cacao TCM_012252 I 0.854
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.854
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I 0.854
OMERI03G27910 Oryza meridionalis OMERI03G27910 I 0.853
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.852
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.850
Pavir.Ia00838 Panicum virgatum Pavir.Ia00838 I 0.848
Si038692m.g Setaria italica Si038692m.g I 0.848
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I 0.848
TCM_019518 Theobroma cacao TCM_019518 I 0.847
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.846
Pm015499 Prunus mume Pm015499 I 0.846
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.845
LPERR03G25950 Leersia perrieri LPERR03G25950 I 0.845
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.845
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.843
30167.m000856 Ricinus communis 30167.m000856 I 0.840
MDP0000224810 Malus domestica MDP0000224810 N 0.839
Cagra.1681s0023 Capsella grandiflora Cagra.1681s0023 I 0.839
Carubv10013748m.g Capsella rubella Carubv10013748m.g I 0.839
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.839
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.838
AC234521.1_FG006 Zea mays AC234521.1_FG006 N 0.837
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I 0.836
Bostr.19424s0807 Boechera stricta Bostr.19424s0807 I 0.836
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.835
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.833
MDP0000272980 Malus domestica MDP0000272980 I 0.833
Bra037579 Brassica rapa Bra037579 I 0.832
Bo1g117490 Brassica oleracea Bo1g117490 I 0.832
Bo3g071560 Brassica oleracea Bo3g071560 I 0.831
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.830
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.830
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.829
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.828
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.828
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.828
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.828
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.827
BRC1 Arabidopsis thaliana AT3G18550 I 0.826
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.826
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.825
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.824
Traes_2BS_03909B330 Triticum aestivum Traes_2BS_03909B330 N 0.824