Bra032394 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra032394 T205168_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.835 0.982
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.835 0.982
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.835 0.982
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.830 0.895
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.830 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra032394.1-P Homeodomain 18 78

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
23225_YPR052C Saccharomyces paradoxus 23225_YPR052C I
A1O1_01197 Capronia coronata A1O1_01197 I
A1O3_08778 Capronia epimyces A1O3_08778 I
A1O5_06047 Cladophialophora psammophila A1O5_06047 I
A1O7_01726 Cladophialophora yegresii A1O7_01726 I
A1O9_00742 Exophiala aquamarina A1O9_00742 I
AAEL002381 Aedes aegypti AAEL002381 N
AAEL011414 Aedes aegypti AAEL011414 N
AAEL011425 Aedes aegypti AAEL011425 I
AALB010797 Anopheles albimanus AALB010797 N
AARA003413 Anopheles arabiensis AARA003413 N
ACAC_0000798501 Angiostrongylus cantonensis ACAC_0000798501 N
ACAC_0000817201 Angiostrongylus cantonensis ACAC_0000817201 N
ACAC_0000857301 Angiostrongylus cantonensis ACAC_0000857301 N
ACHR003270 Anopheles christyi ACHR003270 N
ACOC_0000235301 Angiostrongylus costaricensis ACOC_0000235301 N
ACOC_0000653601 Angiostrongylus costaricensis ACOC_0000653601 N
ACOC_0001190001 Angiostrongylus costaricensis ACOC_0001190001 N
ACOM026236 Anopheles coluzzii ACOM026236 N
ACYPI006576 Acyrthosiphon pisum ACYPI006576 I
ADAC005122 Anopheles darlingi ADAC005122 N
ADIR000495 Anopheles dirus ADIR000495 N
AEPI002535 Anopheles epiroticus AEPI002535 N
AFUN009599 Anopheles funestus AFUN009599 N
AGAP012334 Anopheles gambiae AGAP012334 N
ALUE_0000365901 Ascaris lumbricoides ALUE_0000365901 N
ALUE_0000448701 Ascaris lumbricoides ALUE_0000448701 N
ALUE_0000605501 Ascaris lumbricoides ALUE_0000605501 N
ALUE_0001798401 Ascaris lumbricoides ALUE_0001798401 N
AMAM007083 Anopheles maculatus AMAM007083 N
AMEC017787 Anopheles melas AMEC017787 N
AMTR_s00046p00227790 Amborella trichopoda AMTR_s00046p00227790 N
ANCCAN_04253 Ancylostoma caninum ANCCAN_04253 N
ANCCAN_08230 Ancylostoma caninum ANCCAN_08230 I
ANCCAN_12424 Ancylostoma caninum ANCCAN_12424 I
ANCCAN_17708 Ancylostoma caninum ANCCAN_17708 I
ANCCAN_19939 Ancylostoma caninum ANCCAN_19939 N
ANCCAN_21637 Ancylostoma caninum ANCCAN_21637 N
ANCCAN_21638 Ancylostoma caninum ANCCAN_21638 I
ANCCEY_04224 Ancylostoma ceylanicum ANCCEY_04224 N
ANCCEY_10464 Ancylostoma ceylanicum ANCCEY_10464 N
ANCDUO_10137 Ancylostoma duodenale ANCDUO_10137 N
ANCDUO_11855 Ancylostoma duodenale ANCDUO_11855 N
ANCDUO_11856 Ancylostoma duodenale ANCDUO_11856 I
ANCDUO_12352 Ancylostoma duodenale ANCDUO_12352 N
ANCDUO_24269 Ancylostoma duodenale ANCDUO_24269 N
ANCDUO_24920 Ancylostoma duodenale ANCDUO_24920 I
ANCDUO_26276 Ancylostoma duodenale ANCDUO_26276 N
AQUA002990 Anopheles quadriannulatus AQUA002990 N
ASIM_0000114801 Anisakis simplex ASIM_0000114801 N
ASIM_0000156001 Anisakis simplex ASIM_0000156001 N
ASIM_0001147101 Anisakis simplex ASIM_0001147101 N
ASIM_0001178701 Anisakis simplex ASIM_0001178701 N
ASU_05752 Ascaris suum ASU_05752 N
ASU_05994 Ascaris suum ASU_05994 N
ASU_07820 Ascaris suum ASU_07820 N
ASU_09087 Ascaris suum ASU_09087 N
ASU_13985 Ascaris suum ASU_13985 N
AUEXF2481DRAFT_32739 Aureobasidium subglaciale AUEXF2481DRAFT_32739 I
A_01848 Schistosoma haematobium A_01848 N
Bcin01g08840 Botrytis cinerea Bcin01g08840 I
BGIBMGA005289 Bombyx mori BGIBMGA005289 I
BGIBMGA007393 Bombyx mori BGIBMGA007393 N
Bm2524 Brugia malayi Bm2524 N
Bm6643 Brugia malayi Bm6643 N
Bm8632 Brugia malayi Bm8632 N
Bra012244 Brassica rapa Bra012244 N
Bra016455 Brassica rapa Bra016455 N
BTMF_0000229601 Brugia timori BTMF_0000229601 N
BTMF_0000420901 Brugia timori BTMF_0000420901 N
BXY_0253100 Bursaphelenchus xylophilus BXY_0253100 N
BXY_1081800 Bursaphelenchus xylophilus BXY_1081800 I
BXY_1081900 Bursaphelenchus xylophilus BXY_1081900 I
CaO19.1730 Candida albicans CaO19.1730 N
CaO19.9298 Candida albicans CaO19.9298 N
CapteG172235 Capitella teleta CapteG172235 I
CBG04066 Caenorhabditis briggsae CBG04066 N
CBG09136 Caenorhabditis briggsae CBG09136 N
CBG20663 Caenorhabditis briggsae CBG20663 N
CBN04053 Caenorhabditis brenneri CBN04053 N
CBN25379 Caenorhabditis brenneri CBN25379 I
Ciclev10033714m.g Citrus clementina Ciclev10033714m.g I
CJA04355 Caenorhabditis japonica CJA04355 N
CJA19030 Caenorhabditis japonica CJA19030 N
Cla005767 Citrullus lanatus Cla005767 I
CLEC003860 Cimex lectularius CLEC003860 I
CPIJ002952 Culex quinquefasciatus CPIJ002952 N
CpipJ_CPIJ002952 Culex pipiens CpipJ_CPIJ002952 N
CRE03995 Caenorhabditis remanei CRE03995 N
CRE11852 Caenorhabditis remanei CRE11852 N
csin108029 Clonorchis sinensis csin108029 N
DAPPUDRAFT_346928 Daphnia pulex DAPPUDRAFT_346928 N
DICVIV_01337 Dictyocaulus viviparus DICVIV_01337 N
DICVIV_05502 Dictyocaulus viviparus DICVIV_05502 N
DME_0000590001 Dracunculus medinensis DME_0000590001 N
DME_0000779601 Dracunculus medinensis DME_0000779601 N
ECANG7_00770 Echinococcus canadensis ECANG7_00770 N
ECPE_0001309901 Echinostoma caproni ECPE_0001309901 N
EEL_0000629001 Elaeophora elaphi EEL_0000629001 N
EEL_0000829801 Elaeophora elaphi EEL_0000829801 N
EmuJ_000894800 Echinococcus multilocularis EmuJ_000894800 N
ENSCPOG00000024750 Cavia porcellus ENSCPOG00000024750 I
SOX11 Ornithorhynchus anatinus ENSOANG00000006361 N
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I
ENSOGAG00000031524 Otolemur garnettii ENSOGAG00000031524 I
ENSORLG00000018700 Oryzias latipes ENSORLG00000018700 N
estExt_fgenesh1_pg.C_2230007 Physcomitrella patens estExt_fgenesh1_pg.C_2230007 I
Eucgr.J00587 Eucalyptus grandis Eucgr.J00587 I
EVEC_0000079801 Enterobius vermicularis EVEC_0000079801 N
EVEC_0000171701 Enterobius vermicularis EVEC_0000171701 N
e_gw1.88.21.1 Fragilariopsis cylindrus e_gw1.88.21.1 N
HmgD Drosophila melanogaster FBgn0004362 N
HmgZ Drosophila melanogaster FBgn0010228 I
HmgZ Drosophila yakuba FBgn0068145 I
HmgD Drosophila yakuba FBgn0068146 N
GA14726 Drosophila pseudoobscura FBgn0074753 I
Ssrp Drosophila pseudoobscura FBgn0078456 N
GF11622 Drosophila ananassae FBgn0088662 I
GF13265 Drosophila ananassae FBgn0090297 N
GG20749 Drosophila erecta FBgn0112936 I
GG22136 Drosophila erecta FBgn0114310 N
GH20784 Drosophila grimshawi FBgn0128247 I
GH21124 Drosophila grimshawi FBgn0128586 N
GH23191 Drosophila grimshawi FBgn0130648 N
GI18728 Drosophila mojavensis FBgn0141467 N
GI20867 Drosophila mojavensis FBgn0143601 I
GL11071 Drosophila persimilis FBgn0148681 N
GL16947 Drosophila persimilis FBgn0154551 N
GL17523 Drosophila persimilis FBgn0155126 I
GM13209 Drosophila sechellia FBgn0168140 N
GM15692 Drosophila sechellia FBgn0170608 I
GM15859 Drosophila sechellia FBgn0170775 N
GD11622 Drosophila simulans FBgn0183362 N
GD25171 Drosophila simulans FBgn0196483 I
GJ20604 Drosophila virilis FBgn0207743 I
GJ21748 Drosophila virilis FBgn0208866 N
GK15658 Drosophila willistoni FBgn0217663 I
GK15924 Drosophila willistoni FBgn0217926 N
GK22092 Drosophila willistoni FBgn0224077 N
GA30453 Drosophila pseudoobscura FBgn0264590 N
G647_10093 Cladophialophora carrionii G647_10093 I
GLYMA02G25940 Glycine max GLYMA02G25940 N
GLYMA03G08270 Glycine max GLYMA03G08270 I
GLYMA12G31670 Glycine max GLYMA12G31670 I
GMDG_05273 Pseudogymnoascus destructans GMDG_05273 I
GPUH_0000029001 Gongylonema pulchrum GPUH_0000029001 N
GPUH_0001272801 Gongylonema pulchrum GPUH_0001272801 N
GPUH_0001539601 Gongylonema pulchrum GPUH_0001539601 N
GPUH_0002275001 Gongylonema pulchrum GPUH_0002275001 N
gw1.6.1665.1 Ostreococcus RCC809 gw1.6.1665.1 I
H101_08199 Trichophyton interdigitale H101_08199 N
Hba_18326 Heterorhabditis bacteriophora Hba_18326 I
HCOI00417600 Haemonchus contortus HCOI00417600 N
HCOI01420700 Haemonchus contortus HCOI01420700 N
HCOI01550200 Haemonchus contortus HCOI01550200 N
HCOI02106600 Haemonchus contortus HCOI02106600 N
HDID_0000239001 Hymenolepis diminuta HDID_0000239001 N
HmN_000028000 Hymenolepis microstoma HmN_000028000 N
HMPREF1120_00213 Exophiala dermatitidis HMPREF1120_00213 I
HNAJ_0000793101 Hymenolepis nana HNAJ_0000793101 I
HPBE_0001796801 Heligmosomoides bakeri HPBE_0001796801 N
HPBE_0002310801 Heligmosomoides bakeri HPBE_0002310801 N
HPBE_0002408301 Heligmosomoides bakeri HPBE_0002408301 I
HPLM_0000803901 Haemonchus placei HPLM_0000803901 N
HPLM_0001324601 Haemonchus placei HPLM_0001324601 N
KGM_13852 Danaus plexippus KGM_13852 I
L596_g16476 Steinernema carpocapsae L596_g16476 N
L596_g28088 Steinernema carpocapsae L596_g28088 N
L596_g8199 Steinernema carpocapsae L596_g8199 N
L889_g16198 Steinernema feltiae L889_g16198 N
L889_g29516 Steinernema feltiae L889_g29516 N
L889_g6592 Steinernema feltiae L889_g6592 N
L889_g9094 Steinernema feltiae L889_g9094 N
L892_g19058 Steinernema scapterisci L892_g19058 N
L892_g23618 Steinernema scapterisci L892_g23618 N
L892_g2503 Steinernema scapterisci L892_g2503 N
L893_g23503 Steinernema glaseri L893_g23503 N
L893_g29974 Steinernema glaseri L893_g29974 N
L898_g4830 Steinernema monticolum L898_g4830 N
L898_g7743 Steinernema monticolum L898_g7743 N
LCUP016801 Lucilia cuprina LCUP016801 N
LOAG_04347 Loa loa LOAG_04347 N
LOAG_08062 Loa loa LOAG_08062 N
LOAG_14354 Loa loa LOAG_14354 N
M437DRAFT_15090 Aureobasidium melanogenum M437DRAFT_15090 I
M7I_1578 Glarea lozoyensis M7I_1578 I
maker-nMf.1.1.scaf04887-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf04887-augustus-gene-0.6 N
MAL8P1.72 Plasmodium falciparum MAL8P1.72 I
MBM_02410 Marssonina brunnea MBM_02410 I
MCINX001064 Melitaea cinxia MCINX001064 I
MDOA009531 Musca domestica MDOA009531 N
MDOA014797 Musca domestica MDOA014797 I
MhA1_Contig400.frz3.gene18 Meloidogyne hapla MhA1_Contig400.frz3.gene18 N
Minc04648 Meloidogyne incognita Minc04648 N
nAv.1.0.1.g03971 Acanthocheilonema viteae nAv.1.0.1.g03971 N
nAv.1.0.1.g08227 Acanthocheilonema viteae nAv.1.0.1.g08227 N
nAv.1.0.1.g09805 Acanthocheilonema viteae nAv.1.0.1.g09805 N
NBR_0000004401 Nippostrongylus brasiliensis NBR_0000004401 N
NBR_0001132501 Nippostrongylus brasiliensis NBR_0001132501 N
NBR_0001277401 Nippostrongylus brasiliensis NBR_0001277401 N
nDi.2.2.2.g04713 Dirofilaria immitis nDi.2.2.2.g04713 N
nDi.2.2.2.g07477 Dirofilaria immitis nDi.2.2.2.g07477 N
nDi.2.2.2.g08508 Dirofilaria immitis nDi.2.2.2.g08508 N
NECAME_10840 Necator americanus NECAME_10840 N
NECAME_14932 Necator americanus NECAME_14932 N
NECAME_16525 Necator americanus NECAME_16525 N
NECAME_17555 Necator americanus NECAME_17555 N
NECAME_17981 Necator americanus NECAME_17981 N
NEMVEDRAFT_v1g59568 Nematostella vectensis NEMVEDRAFT_v1g59568 N
nLs.2.1.2.g02941 Litomosoides sigmodontis nLs.2.1.2.g02941 N
nLs.2.1.2.g04082 Litomosoides sigmodontis nLs.2.1.2.g04082 N
nLs.2.1.2.g07238 Litomosoides sigmodontis nLs.2.1.2.g07238 N
nOo.2.0.1.g01970 Onchocerca ochengi nOo.2.0.1.g01970 N
nOo.2.0.1.g02324 Onchocerca ochengi nOo.2.0.1.g02324 N
nOo.2.0.1.g04693 Onchocerca ochengi nOo.2.0.1.g04693 N
Ocbimv22006454m.g Octopus bimaculoides Ocbimv22006454m.g N
OESDEN_09619 Oesophagostomum dentatum OESDEN_09619 N
OESDEN_18796 Oesophagostomum dentatum OESDEN_18796 N
OFLC_0000496201 Onchocerca flexuosa OFLC_0000496201 N
OFLC_0000770701 Onchocerca flexuosa OFLC_0000770701 N
OIDMADRAFT_143526 Oidiodendron maius OIDMADRAFT_143526 I
orange1.1g046045m.g Citrus sinensis orange1.1g046045m.g I
OSTLU_18991 Ostreococcus lucimarinus OSTLU_18991 N
OSTLU_31946 Ostreococcus lucimarinus OSTLU_31946 I
PBANKA_071290 Plasmodium berghei PBANKA_071290 I
PKH_051400 Plasmodium knowlesi PKH_051400 I
PPA02261 Pristionchus pacificus PPA02261 N
PPA06513 Pristionchus pacificus PPA06513 N
PPA10381 Pristionchus pacificus PPA10381 N
PPA14042 Pristionchus pacificus PPA14042 N
Ppa-hmg-1.1 Pristionchus pacificus PPA22767 N
PPAI002522 Phlebotomus papatasi PPAI002522 I
PTRK_0000111400 Parastrongyloides trichosuri PTRK_0000111400 N
PTRK_0001161700 Parastrongyloides trichosuri PTRK_0001161700 N
PTRK_0001490800 Parastrongyloides trichosuri PTRK_0001490800 N
PV04_00198 Capronia semiimmersa PV04_00198 I
PV05_09944 Exophiala xenobiotica PV05_09944 I
PV06_04154 Exophiala oligosperma PV06_04154 I
PV07_09313 Cladophialophora immunda PV07_09313 I
PV08_04655 Exophiala spinifera PV08_04655 I
PV10_01993 Exophiala mesophila PV10_01993 I
PV11_09703 Exophiala sideris PV11_09703 I
PVX_089520 Plasmodium vivax PVX_089520 I
PXEA_0001829801 Protopolystoma xenopodis PXEA_0001829801 N
PY07077 Plasmodium yoelii PY07077 I
RPRC006380 Rhodnius prolixus RPRC006380 I
RSKR_0000128800 Rhabditophanes kr3021 RSKR_0000128800 N
RSKR_0000269200 Rhabditophanes kr3021 RSKR_0000269200 N
RSKR_0000269500 Rhabditophanes kr3021 RSKR_0000269500 N
RSKR_0000587700 Rhabditophanes kr3021 RSKR_0000587700 N
RSKR_0000733200 Rhabditophanes kr3021 RSKR_0000733200 N
RSKR_0000746900 Rhabditophanes kr3021 RSKR_0000746900 N
SBOR_0403 Sclerotinia borealis SBOR_0403 I
scaffold113-EXSNAP2012.49 Pristionchus exspectatus scaffold113-EXSNAP2012.49 N
scaffold1425-EXSNAP2012.3 Pristionchus exspectatus scaffold1425-EXSNAP2012.3 N
scaffold164-EXSNAP2012.19 Pristionchus exspectatus scaffold164-EXSNAP2012.19 N
scaffold98-EXSNAP2012.51 Pristionchus exspectatus scaffold98-EXSNAP2012.51 N
scaffold_600397.1 Arabidopsis lyrata scaffold_600397.1 I
SCUD_0000070901 Schistosoma curassoni SCUD_0000070901 N
Sjc_0035580 Schistosoma japonicum Sjc_0035580 N
Sjc_0095610 Schistosoma japonicum Sjc_0095610 N
Smp_148930 Schistosoma mansoni Smp_148930 N
SMTD_0001155301 Schistosoma mattheei SMTD_0001155301 N
SMUV_0000499601 Syphacia muris SMUV_0000499601 N
SPAL_0000986100 Strongyloides papillosus SPAL_0000986100 N
SPAL_0001085700 Strongyloides papillosus SPAL_0001085700 N
SPAL_0001421900 Strongyloides papillosus SPAL_0001421900 N
SPU_023988 Strongylocentrotus purpuratus SPU_023988 N
SS1G_04584 Sclerotinia sclerotiorum SS1G_04584 I
SSLN_0000125101 Schistocephalus solidus SSLN_0000125101 N
SSTP_0000585600 Strongyloides stercoralis SSTP_0000585600 N
SSTP_0000790100 Strongyloides stercoralis SSTP_0000790100 N
SSTP_0001024100 Strongyloides stercoralis SSTP_0001024100 N
SVE_0294800 Strongyloides venezuelensis SVE_0294800 N
SVE_0536900 Strongyloides venezuelensis SVE_0536900 N
SVE_0954900 Strongyloides venezuelensis SVE_0954900 N
SVUK_0001398701 Strongylus vulgaris SVUK_0001398701 N
SVUK_0001721701 Strongylus vulgaris SVUK_0001721701 N
SVUK_0001798101 Strongylus vulgaris SVUK_0001798101 N
T265_15460 Opisthorchis viverrini T265_15460 N
TASK_0000475801 Taenia asiatica TASK_0000475801 N
TCLT_0000071201 Thelazia callipaeda TCLT_0000071201 N
TCLT_0000097001 Thelazia callipaeda TCLT_0000097001 N
TCNE_0000332201 Toxocara canis TCNE_0000332201 N
TCNE_0001025901 Toxocara canis TCNE_0001025901 N
TCNE_0001783901 Toxocara canis TCNE_0001783901 N
TELCIR_02603 Teladorsagia circumcincta TELCIR_02603 N
TELCIR_05217 Teladorsagia circumcincta TELCIR_05217 N
TELCIR_22690 Teladorsagia circumcincta TELCIR_22690 N
TriadG64155 Trichoplax adhaerens TriadG64155 I
TsM_000111500 Taenia solium TsM_000111500 N
TTAC_0000692101 Hydatigera taeniaeformis TTAC_0000692101 N
V499_08602 Pseudogymnoascus pannorum V499_08602 I
hmg-1.1 Caenorhabditis elegans WBGene00001971 N
hmg-3 Caenorhabditis elegans WBGene00001973 N
hmg-4 Caenorhabditis elegans WBGene00001974 N
WBGene00237022 Onchocerca volvulus WBGene00237022 N
WBGene00238628 Onchocerca volvulus WBGene00238628 N
WBGene00244511 Onchocerca volvulus WBGene00244511 N
WUBG_02390 Wuchereria bancrofti WUBG_02390 N
WUBG_03677 Wuchereria bancrofti WUBG_03677 N
WUBG_06999 Wuchereria bancrofti WUBG_06999 N
Z517_02317 Fonsecaea pedrosoi Z517_02317 I
Z518_04911 Rhinocladiella mackenziei Z518_04911 I
Z519_04692 Cladophialophora bantiana Z519_04692 I