Cagra.1681s0007 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.1681s0007 T228217_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1681s0007.1.p Homeodomain 18 76
Cagra.1681s0007.2.p Homeodomain 18 76
Cagra.1681s0007.3.p Homeodomain 18 76
Cagra.1681s0007.4.p Homeodomain 18 76

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29815.m000499 Ricinus communis 29815.m000499 I
29822.m003500 Ricinus communis 29822.m003500 I
29983.m003123 Ricinus communis 29983.m003123 I
AC233899.1_FG004 Zea mays AC233899.1_FG004 I
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I
AMTR_s00059p00141510 Amborella trichopoda AMTR_s00059p00141510 I
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I
ATHB-23 Arabidopsis thaliana AT1G26960 I
AT1G27045 Arabidopsis thaliana AT1G27045 I
ATHB-22 Arabidopsis thaliana AT2G36610 D
ATHB-20 Arabidopsis thaliana AT3G01220 D
ATHB-51 Arabidopsis thaliana AT5G03790 D
HAT7 Arabidopsis thaliana AT5G15150 I
ATHB-52 Arabidopsis thaliana AT5G53980 I
HOX20 Oryza indica BGIOSGA026788 I
HOX4 Oryza indica BGIOSGA030941 I
Bo12274s010 Brassica oleracea Bo12274s010 I
Bo1g158730 Brassica oleracea Bo1g158730 I
Bo2g012410 Brassica oleracea Bo2g012410 I
Bo2g042250 Brassica oleracea Bo2g042250 I
Bo3g002560 Brassica oleracea Bo3g002560 I
Bo3g010120 Brassica oleracea Bo3g010120 I
Bo4g034490 Brassica oleracea Bo4g034490 I
Bo4g100070 Brassica oleracea Bo4g100070 I
Bo5g041500 Brassica oleracea Bo5g041500 I
Bo8g076330 Brassica oleracea Bo8g076330 I
Bo9g165360 Brassica oleracea Bo9g165360 I
Bo9g181710 Brassica oleracea Bo9g181710 I
Bo9g181720 Brassica oleracea Bo9g181720 I
Bostr.12659s0299 Boechera stricta Bostr.12659s0299 I
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I
Bra005259 Brassica rapa Bra005259 I
Bra006285 Brassica rapa Bra006285 I
Bra008717 Brassica rapa Bra008717 I
Bra009510 Brassica rapa Bra009510 I
Bra014417 Brassica rapa Bra014417 I
Bra016300 Brassica rapa Bra016300 I
Bra018155 Brassica rapa Bra018155 I
Bra022687 Brassica rapa Bra022687 I
Bra023506 Brassica rapa Bra023506 I
Bra024665 Brassica rapa Bra024665 I
Bra028820 Brassica rapa Bra028820 I
Bra039135 Brassica rapa Bra039135 I
BRADI4G32737 Brachypodium distachyon BRADI4G32737 I
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I
Cagra.1150s0002 Capsella grandiflora Cagra.1150s0002 I
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I
Carubv10001498m.g Capsella rubella Carubv10001498m.g I
Carubv10002440m.g Capsella rubella Carubv10002440m.g I
Carubv10002831m.g Capsella rubella Carubv10002831m.g I
Carubv10003464m.g Capsella rubella Carubv10003464m.g I
Carubv10010076m.g Capsella rubella Carubv10010076m.g I
Carubv10014214m.g Capsella rubella Carubv10014214m.g I
Carubv10024148m.g Capsella rubella Carubv10024148m.g I
Carubv10027280m.g Capsella rubella Carubv10027280m.g I
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I
cassava14646.m1 Manihot esculenta cassava14646.m1 I
cassava34082.m1 Manihot esculenta cassava34082.m1 I
cassava39955.m1 Manihot esculenta cassava39955.m1 I
Ca_00750 Cicer arietinum Ca_00750 I
Ca_10527 Cicer arietinum Ca_10527 I
Ca_20151 Cicer arietinum Ca_20151 I
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I
Cla010510 Citrullus lanatus Cla010510 I
Cla018017 Citrullus lanatus Cla018017 I
Cla018641 Citrullus lanatus Cla018641 I
Cucsa.125070 Cucumis sativus Cucsa.125070 I
Cucsa.158420 Cucumis sativus Cucsa.158420 I
Cucsa.378700 Cucumis sativus Cucsa.378700 I
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I
AtHB23 Arabidopsis lyrata fgenesh2_kg.1__2657__AT1G26960.1 I
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I
GLYMA03G34710 Glycine max GLYMA03G34710 I
GLYMA06G35050 Glycine max GLYMA06G35050 I
GLYMA09G37410 Glycine max GLYMA09G37410 I
GLYMA10G07440 Glycine max GLYMA10G07440 I
GLYMA13G05270 Glycine max GLYMA13G05270 I
GLYMA13G21330 Glycine max GLYMA13G21330 I
GLYMA18G49290 Glycine max GLYMA18G49290 I
GLYMA19G02490 Glycine max GLYMA19G02490 I
GLYMA19G37380 Glycine max GLYMA19G37380 I
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I
Gorai.007G051100 Gossypium raimondii Gorai.007G051100 I
Gorai.007G206000 Gossypium raimondii Gorai.007G206000 I
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I
GRMZM2G034113 Zea mays GRMZM2G034113 I
GRMZM2G041127 Zea mays GRMZM2G041127 I
GRMZM2G041462 Zea mays GRMZM2G041462 I
GRMZM2G056600 Zea mays GRMZM2G056600 I
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I
GSMUA_Achr2G14750_001 Musa acuminata GSMUA_Achr2G14750_001 I
GSMUA_Achr3G06620_001 Musa acuminata GSMUA_Achr3G06620_001 I
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I
GSMUA_Achr7G11760_001 Musa acuminata GSMUA_Achr7G11760_001 I
GSMUA_Achr9G14960_001 Musa acuminata GSMUA_Achr9G14960_001 I
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I
LPERR08G15240 Leersia perrieri LPERR08G15240 I
LPERR09G09790 Leersia perrieri LPERR09G09790 I
Lus10003492.g Linum usitatissimum Lus10003492.g I
Lus10008641.g Linum usitatissimum Lus10008641.g I
Lus10013103.g Linum usitatissimum Lus10013103.g I
Lus10035583.g Linum usitatissimum Lus10035583.g I
MDP0000119544 Malus domestica MDP0000119544 I
MDP0000124827 Malus domestica MDP0000124827 I
MDP0000134241 Malus domestica MDP0000134241 I
MDP0000146339 Malus domestica MDP0000146339 I
MDP0000311522 Malus domestica MDP0000311522 I
MDP0000737128 Malus domestica MDP0000737128 I
MDP0000738604 Malus domestica MDP0000738604 I
MDP0000789571 Malus domestica MDP0000789571 I
MDP0000909160 Malus domestica MDP0000909160 I
mgf013301m Mimulus guttatus mgf013301m I
mgf019824m Mimulus guttatus mgf019824m I
mgf022748m Mimulus guttatus mgf022748m I
MTR_1g061660 Medicago truncatula MTR_1g061660 I
MTR_6g011610 Medicago truncatula MTR_6g011610 I
MTR_7g103340 Medicago truncatula MTR_7g103340 I
OB08G25440 Oryza brachyantha OB08G25440 I
OB09G20040 Oryza brachyantha OB09G20040 I
OBART08G18330 Oryza barthii OBART08G18330 I
OGLUM08G19260 Oryza glumaepatula OGLUM08G19260 I
OGLUM09G14010 Oryza glumaepatula OGLUM09G14010 I
OLONG_010656 Oryza longistaminata OLONG_010656 I
OMERI08G14350 Oryza meridionalis OMERI08G14350 I
ONIVA08G20420 Oryza nivara ONIVA08G20420 I
ONIVA09G13990 Oryza nivara ONIVA09G13990 I
OPUNC08G16250 Oryza punctata OPUNC08G16250 I
OPUNC09G11870 Oryza punctata OPUNC09G11870 I
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I
ORGLA08G0159100 Oryza glaberrima ORGLA08G0159100 I
ORGLA09G0102600 Oryza glaberrima ORGLA09G0102600 I
ORUFI09G14530 Oryza rufipogon ORUFI09G14530 I
HOX20 Oryza sativa OS08G0481400 I
HOX4 Oryza sativa OS09G0470500 I
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I
Pavir.Fa00633 Panicum virgatum Pavir.Fa00633 I
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I
Pavir.J20523 Panicum virgatum Pavir.J20523 I
Pavir.J27155 Panicum virgatum Pavir.J27155 I
Pavir.J41033 Panicum virgatum Pavir.J41033 I
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I
PK15535.1 Cannabis sativa PK15535.1 I
PK20392.1 Cannabis sativa PK20392.1 D
Pm011328 Prunus mume Pm011328 I
Pm015861 Prunus mume Pm015861 I
Pm018314 Prunus mume Pm018314 I
Pm026270 Prunus mume Pm026270 I
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I
SapurV1A.0817s0120 Salix purpurea SapurV1A.0817s0120 I
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I
Sb02g027300 Sorghum bicolor Sb02g027300 I
Sb02g030660 Sorghum bicolor Sb02g030660 I
ATHB20 Arabidopsis lyrata scaffold_300109.1 I
Si014231m.g Setaria italica Si014231m.g I
Si030822m.g Setaria italica Si030822m.g I
Si030983m.g Setaria italica Si030983m.g I
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I
TCM_000438 Theobroma cacao TCM_000438 I
TCM_018470 Theobroma cacao TCM_018470 I
TCM_022391 Theobroma cacao TCM_022391 I
TCM_031644 Theobroma cacao TCM_031644 I
Thhalv10008487m.g Eutrema salsugineum Thhalv10008487m.g I
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I
Traes_5BL_5DE02D63E Triticum aestivum Traes_5BL_5DE02D63E I
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I